Plant FIBer expression Database

Potri.016G129250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62550 48 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G063700
[exp]
59 / 5e-10 AT5G62550 157 / 1e-43 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023614
[exp]
49 / 7e-07 AT5G62550 131 / 4e-34 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G129250.1 pacid=42810574 polypeptide=Potri.016G129250.1.p locus=Potri.016G129250 ID=Potri.016G129250.1.v4.1 annot-version=v4.1
ATGCAATGGATCATCCAATCCCATTTCCAGGCATGCTTCTTTGGGATGCTCGCGGCGAAAACACTGGCTTTGAAACCCAAGACTACCCGCAAAATTACTG
ATGCATCGACAAGAACTGCGGCCGAAAAGGAGCCTCCAATTCCCAAGCAGAAGCGAGTGTTTGGTACCATTCGAAGCACAAACATTCATGTCAAAACAGC
AACCGAAAATCCAATTACCAAGCAACCCAAATCTATAACAATAAGAGGAAATCCTAGCATAAATGTCACAACCGATCAAGTTGCCAAGAAACCAGAAAGA
TTCAAGAAGAAAGTACAGAAGCCCGAGAAAAGGTTTGATAAGCTTGAAACTGCTTCTTGTTGGCTTGGTCAGATCAAGTTGGCTGAATCAGTCGGCAAAC
ATTTCGTCCCTATTGCCTTAATTCGTTTGCCTTCGATTCCAATGTTGGCTGAATCAGTCGGCAAACATCTCGTTTCTGTTGCCTTCTTTCGTCTTGCCTT
CGATTCCAATCCCATAAGGAACCTTCGTGCTGAGCTGAAACGATACATGGGACGACATGGGTACCTGTCTTACGAGGCAGAGTGGAAAGAAGTCAGTCGC
AGCTATGGAATTTTGAAGGATGAAAGCAATGTAGGAGGTGAAAGTTTAGAACTTGGAAAAGGGAAGACAACTTGTAGATAA
AA sequence
>Potri.016G129250.1 pacid=42810574 polypeptide=Potri.016G129250.1.p locus=Potri.016G129250 ID=Potri.016G129250.1.v4.1 annot-version=v4.1
MQWIIQSHFQACFFGMLAAKTLALKPKTTRKITDASTRTAAEKEPPIPKQKRVFGTIRSTNIHVKTATENPITKQPKSITIRGNPSINVTTDQVAKKPER
FKKKVQKPEKRFDKLETASCWLGQIKLAESVGKHFVPIALIRLPSIPMLAESVGKHLVSVAFFRLAFDSNPIRNLRAELKRYMGRHGYLSYEAEWKEVSR
SYGILKDESNVGGESLELGKGKTTCR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62550 unknown protein Potri.016G129250
[exp]
0 1
AT3G51030 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOX... Potri.005G232650
[exp]
7.93 1.0000
AT5G03980 SGNH hydrolase-type esterase s... Potri.005G025000
[exp]
9.00 1.0000
AT5G23660 MTN3, SWEET12, ... homolog of Medicago truncatula... Potri.015G101700
[exp]
10.00 0.9991
AT5G50400 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE AC... Potri.003G202200
[exp]
11.48 0.9958
AT5G02070 Protein kinase family protein ... Potri.013G011700
[exp]
12.00 0.9955
AT5G38760 Late embryogenesis abundant pr... Potri.004G107500
[exp]
13.78 0.9769
AT5G13170 SAG29, SWEET15,... senescence-associated gene 29 ... Potri.001G060900
[exp]
13.96 0.9794
AT5G63030 GRXC1 glutaredoxin C1, Thioredoxin s... Potri.012G082800
[exp]
14.00 0.9814
Potri.018G128750
[exp]
14.14 0.9676
AT5G23960 ATTPS21 terpene synthase 21 (.1.2) Potri.019G020367
[exp]
15.96 0.9779

Potri.016G129250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.