Plant FIBer expression Database

Potri.016G129400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G129400.2 pacid=42809359 polypeptide=Potri.016G129400.2.p locus=Potri.016G129400 ID=Potri.016G129400.2.v4.1 annot-version=v4.1
ATGGACAATATGGGTTCATCACTAGAGAGTGATCCTTCAAGAAGGCCCATGAGAAGGAGGTCTCATACTAGAAAGACTAACACCCAAGATCGTGTCATCA
ACATGGCTGAAGCAAGAAGAGAGATTGCTCATGCTTTGCACCTTCATAGATCATCATCAGCCTCATCCCCGTCCTCAGCCTCATCCGGTGCTTCAAGAAG
GGATCCTACCATTTTGTTAGGTAATAATTACAGTAACTATGGCATCAATAATAAGTCTTGTTTTGCTAGAAATTCTCAGTACCTTTGCTATTCATTGACG
GATACTTTGCCAACCCCTGAGCCTGTCTGGTCTACTACTACTACAACAACAGTTCTGACAACACCACCCCCAATGGAAAGTACAGAATTTGAGTGGGGAG
AAAATCAAGCTGCTTCGTATAGTTGGTGGCTAGGGTTCTTAAAGACCTTGGATGGTAATAGTAATACCCGGCCATGTCTTAAAGATGAAGCAGAAATGAT
CAGTGATCCTAGAGTGTTTGGTCAGTGTGAGATTAATGTTTCAGGGCTTGAAGAATCAAGTCATGACCAGCTTACCTCAATATCTACAGATGAATGGTTG
ACGTTTCCAAACAATGAAGATCAAGATGAGAGGCAATTAGTCCCTTAA
AA sequence
>Potri.016G129400.2 pacid=42809359 polypeptide=Potri.016G129400.2.p locus=Potri.016G129400 ID=Potri.016G129400.2.v4.1 annot-version=v4.1
MDNMGSSLESDPSRRPMRRRSHTRKTNTQDRVINMAEARREIAHALHLHRSSSASSPSSASSGASRRDPTILLGNNYSNYGINNKSCFARNSQYLCYSLT
DTLPTPEPVWSTTTTTTVLTTPPPMESTEFEWGENQAASYSWWLGFLKTLDGNSNTRPCLKDEAEMISDPRVFGQCEINVSGLEESSHDQLTSISTDEWL
TFPNNEDQDERQLVP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G129400
[exp]
0 1
AT4G05200 CRK25 cysteine-rich RLK (RECEPTOR-li... Potri.004G026200
[exp]
4.69 0.7564
AT3G07350 Protein of unknown function (D... Potri.004G184700
[exp]
4.69 0.7544
AT4G21410 CRK29 cysteine-rich RLK (RECEPTOR-li... Potri.004G025425
[exp]
9.00 0.7325
AT5G57655 xylose isomerase family protei... Potri.018G096049
[exp]
12.48 0.7093
AT1G15670 Galactose oxidase/kelch repeat... Potri.001G007000
[exp]
14.14 0.6888
AT4G25700 BCH1, B1, CHY1,... BETA CAROTENOID HYDROXYLASE 1,... Potri.004G074000
[exp]
17.54 0.6805 BETA-OHASE.2
AT5G24890 unknown protein Potri.018G008200
[exp]
37.41 0.6604
AT1G54070 Dormancy/auxin associated fami... Potri.003G070500
[exp]
53.04 0.6185
AT3G13670 Protein kinase family protein ... Potri.003G215700
[exp]
53.66 0.6270
AT1G17830 Protein of unknown function (D... Potri.018G152500
[exp]
59.96 0.6457

Potri.016G129400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.