Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01740 179 / 2e-58 Nuclear transport factor 2 (NTF2) family protein (.1) AT3G10985 74 / 8e-18 WI12, ATWI-12, SAG20 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G129500 [exp] 281 / 6e-99 AT5G01740 179 / 2e-58 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.013G153801 [exp] 102 / 1e-27 AT3G10985 88 / 3e-22 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.019G125900 [exp] 96 / 2e-25 AT3G10985 93 / 9e-25 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.010G182200 [exp] 77 / 7e-19 AT3G10985 123 / 8e-38 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1) Potri.008G075200 [exp] 75 / 8e-18 AT3G10985 131 / 5e-41 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001261 [exp] 182 / 2e-58 AT5G01740 139 / 1e-41 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10022755 [exp] 166 / 2e-52 AT5G01740 135 / 5e-40 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10029439 [exp] 165 / 6e-52 AT5G01740 128 / 3e-37 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10017421 [exp] 129 / 5e-38 AT5G01740 115 / 2e-32 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10010223 [exp] 132 / 5e-36 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [poplar] [flax] NTF2 PF07107 [poplar] [flax] WI12 Wound-induced protein WI12
Representative CDS sequence Show only first row Show all	>Potri.016G129600.1 pacid=42809762 polypeptide=Potri.016G129600.1.p locus=Potri.016G129600 ID=Potri.016G129600.1.v4.1 annot-version=v4.1 ATGTCTGCCAATGCCATTGAATCCCCTATGCCGGAATCCTTTTTGAAAGTAGAAATGCAAAACAAGGGCATTGTTGATGCACTGTATAAGGGATTATCAA ATGGTCACATGGGGACAGTGGCCAAACTCATAGCAAGTGATCTAGAATGGTGGTTCCATGGACCTCCACGATGCCAACACATGATGAGAATACTCACCGG GGAGTCTAGCCACACCAAGTTCAAGTTCGAGCCAAGAAGCATTGAGGTCGTCGGTGATTGTGTGATTGCGGAGGGCTGGGAAGGTGCACAAGTTTACTGG GTGCATGTATGGACCTTGAAAGATGGTGTGATCACACAATTTAGAGAGTACTTCAATACATGGCTCACCGTGAAGGATATAAGCCCACATGGTTGGGAAA TTAGGCATGAGAACCACACCTTGTGGCAGAGCCACCCAAGAGACCTTTTCAGCCGCTCATTGCCTGGCCTTATTCTCGGTATTTAG
AA sequence Show only first row Show all	>Potri.016G129600.1 pacid=42809762 polypeptide=Potri.016G129600.1.p locus=Potri.016G129600 ID=Potri.016G129600.1.v4.1 annot-version=v4.1 MSANAIESPMPESFLKVEMQNKGIVDALYKGLSNGHMGTVAKLIASDLEWWFHGPPRCQHMMRILTGESSHTKFKFEPRSIEVVGDCVIAEGWEGAQVYW VHVWTLKDGVITQFREYFNTWLTVKDISPHGWEIRHENHTLWQSHPRDLFSRSLPGLILGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01740			Nuclear transport factor 2 (NT...		Potri.016G129600 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041700 [exp]	8.18	0.9819	Pt-PRP4.3
					Potri.006G028601 [exp]	11.31	0.9808
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G151200 [exp]	12.40	0.9785	SP1.2
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Potri.017G086300 [exp]	13.41	0.9798
AT5G01740			Nuclear transport factor 2 (NT...		Potri.016G129500 [exp]	15.23	0.9231
					Potri.006G027800 [exp]	16.00	0.9790
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Potri.005G109300 [exp]	19.36	0.9786	MDPIP1.1
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.001G259100 [exp]	26.83	0.9769
AT4G27290			S-locus lectin protein kinase ...		Potri.001G414000 [exp]	26.83	0.9769
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G115800 [exp]	29.06	0.9749	CPRD49.1

Compare expression of checked genes

Potri.016G129600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.