Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ASNAP.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56190 360 / 1e-125 ASNAP, ALPHA-SNAP2 alpha-soluble NSF attachment protein 2 (.1.2) AT3G56450 223 / 1e-70 ALPHA-SNAP1 alpha-soluble NSF attachment protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G181900 [exp] 405 / 1e-143 AT3G56190 366 / 3e-128 alpha-soluble NSF attachment protein 2 (.1.2) Potri.008G075400 [exp] 405 / 2e-143 AT3G56190 360 / 6e-126 alpha-soluble NSF attachment protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001258 [exp] 424 / 3e-151 AT3G56190 360 / 7e-126 alpha-soluble NSF attachment protein 2 (.1.2) Lus10002410 [exp] 418 / 1e-148 AT3G56190 428 / 1e-152 alpha-soluble NSF attachment protein 2 (.1.2) Lus10032835 [exp] 397 / 2e-139 AT3G56190 385 / 6e-135 alpha-soluble NSF attachment protein 2 (.1.2) Lus10012211 [exp] 389 / 2e-127 AT3G08840 1101 / 0.0 D-alanine--D-alanine ligase family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF14938 [poplar] [flax] SNAP Soluble NSF attachment protein, SNAP
Representative CDS sequence Show only first row Show all	>Potri.016G129900.1 pacid=42810068 polypeptide=Potri.016G129900.1.p locus=Potri.016G129900 ID=Potri.016G129900.1.v4.1 annot-version=v4.1 ATGGGGGATCACATTAGAAGAGGAGAAGAATTCGAGAAAAAAGCAGATAAGAAAATCAACGGCTGGGTTTTACTGGGCTCTAAATACGAAGATGCTGCTG ATTTGCTTACCCAATCCGCCAATCAATTTAAACTCGCCAAATCTTGGGATAAAGCTGGGTCTGTTTTCATCAAGTTGTCTAATTGTCATTTAAAGTTGGA TAGCAGACATGAAGCTGCTACTGCTTATGTAGATGCCGCAAGCTGCTACAAGAAAACATCAACTAAAGGGGCTATCTCGTGCTATTTGCAAGCAGTGGAT ATTTATGTTGATATGGGAAGGTATAGCAATGCTGCAAAGTATTGCAAGGAAATTGGTGAGTTGTATGAGCTCGAGCAAAACAGTGACAAGGCTATTATGT ACTTTGAAAAGGCTGCGGATTATTTTGAATTTCAAGAATCAAACTCCCTTGCTAACAAGTGCAAGCTGAAAGTTGCAGAAATTTCTGCTCAACTTGAACA ATATCAGAAAGCAATTCAGATATATGAAGATGTAGCACGACAGTCGCTCAACAATAACTTGTTAAAATATGGAGTACGAGGACATCTTCTCAATGCTGGG ATTTGCCAACTCTGCAGAGGCGATGTTGTTGCCATAACCAATGCACTGGAGCAATATGAGAATTTGGATCCAACATTTTCTAGAACTCGGGAATACAAAT TTTTATCAGATTTAGCTACTGCAATTGATGAGGAGGATGTTCCGAAGCTCACTTCCATTATCAAGGAATTTGATAGCATTTCCAAGCTGGATTCTTGGAA GGTCACACTTCTGTTGAAAGTCAAGAATGCCCTGAAGTCCAAAGAACTAGAGGATGATTTGACCTGA
AA sequence Show only first row Show all	>Potri.016G129900.1 pacid=42810068 polypeptide=Potri.016G129900.1.p locus=Potri.016G129900 ID=Potri.016G129900.1.v4.1 annot-version=v4.1 MGDHIRRGEEFEKKADKKINGWVLLGSKYEDAADLLTQSANQFKLAKSWDKAGSVFIKLSNCHLKLDSRHEAATAYVDAASCYKKTSTKGAISCYLQAVD IYVDMGRYSNAAKYCKEIGELYELEQNSDKAIMYFEKAADYFEFQESNSLANKCKLKVAEISAQLEQYQKAIQIYEDVARQSLNNNLLKYGVRGHLLNAG ICQLCRGDVVAITNALEQYENLDPTFSRTREYKFLSDLATAIDEEDVPKLTSIIKEFDSISKLDSWKVTLLLKVKNALKSKELEDDLT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.016G129900 [exp]	0	1	ASNAP.2
AT5G13810			Glutaredoxin family protein (....		Potri.001G026600 [exp]	1.41	0.8062
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G263500 [exp]	2.00	0.8153	CIPK25.1
AT2G41690	HSF	AT-HSFB3, HSFB3	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.016G056500 [exp]	3.00	0.7979	HSFB3.2
AT2G46150			Late embryogenesis abundant (L...		Potri.003G133400 [exp]	4.47	0.7433
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Potri.006G066600 [exp]	10.90	0.7711
AT1G55760			BTB/POZ domain-containing prot...		Potri.001G468700 [exp]	11.61	0.7852
AT5G23750			Remorin family protein (.1.2)		Potri.012G140800 [exp]	11.66	0.7705
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.012G127700 [exp]	11.74	0.7805
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Potri.010G194600 [exp]	12.96	0.7616	PtrProT2
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.003G183900 [exp]	13.85	0.7877

Compare expression of checked genes

Potri.016G129900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.