Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45100 749 / 0 SETH2 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G73160 74 / 7e-14 UDP-Glycosyltransferase superfamily protein (.1) AT5G01220 57 / 1e-08 SQD2 sulfoquinovosyldiacylglycerol 2 (.1) AT4G19460 53 / 3e-07 UDP-Glycosyltransferase superfamily protein (.1) AT5G37180 49 / 8e-06 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT1G78800 44 / 0.0001 UDP-Glycosyltransferase superfamily protein (.1) AT4G10120 42 / 0.001 ATSPS4F Sucrose-phosphate synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G097600 [exp] 61 / 1e-09 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.016G112600 [exp] 60 / 1e-09 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.011G097000 [exp] 59 / 3e-09 AT1G73160 657 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G105500 [exp] 56 / 5e-08 AT4G19460 664 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G128300 [exp] 52 / 6e-07 AT4G19460 645 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024892 [exp] 799 / 0 AT3G45100 731 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022925 [exp] 561 / 0 AT3G45100 536 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10034760 [exp] 62 / 5e-10 AT4G19460 636 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10033297 [exp] 59 / 4e-09 AT4G19460 620 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10002499 [exp] 57 / 1e-08 AT5G01220 721 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10014499 [exp] 57 / 2e-08 AT1G73160 616 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10004832 [exp] 57 / 2e-08 AT5G01220 629 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10032187 [exp] 53 / 3e-07 AT1G73160 615 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF08288 [poplar] [flax] PIGA PIGA (GPI anchor biosynthesis)
Representative CDS sequence Show only first row Show all	>Potri.016G130000.8 pacid=42808993 polypeptide=Potri.016G130000.8.p locus=Potri.016G130000 ID=Potri.016G130000.8.v4.1 annot-version=v4.1 ATGGCTGATCAGAAGCACAGAATCCTGATGGTTTCAGATTTTTTCTTTCCCAATTTTGGTGGTGTCGAGAGCCATATTTATTATCTATCTCAATGCCTGC TAAAGCTTGGTCACAAGGTGGTTGTTATGACTCATGCTTATGGTAATCGCTCTGGGGTGAGATACATGACTGGTGGCCTTAAAGTTTACTATGTACCATG GAGACCATTTCTTATGCAGAACACCTTGCCAACTGTTTACGGGACACTTCCAATTGTAAGGACTATCCTTGTTCGAGAAAAAATATCATTGGTGCATGGA CATCAAGCCTTCTCAACTCTTTGTCATGAAGCGTTGATGCATGCACGCACCATGGGTTACAAAGTTGTATTTACTGATCATTCACTCTATGGTTTTGCTG ATATCGGAAGCATTCACATGAACAAGGTGTTGCAATTCACTTTAGCAGACGTGAGCCAGGCCATTTGTGTTTCTCATACAAGCAAGGAAAACACAGTGTT ACGGTCAGGTCTACCACCAGAAAAGGTTTTCATGATACCAAATGCTGTTGACACTGCTATGTTCAAGCCAGCCCCAGAGCGACTTGGCAATGATGAAATT ATTATTGTTGTGATAAGTAGATTGGTTTATCGAAAGGGTGCAGACTTGCTTGTTGAAGTCATTCCAGAAATTTGCCGTTTGTATCCTAATGTCAGGTTCA TTGTTGGAGGAGATGGACCTAAACGGGTAAGGCTGGAAGAGATGAGGGAAAGACACTCTCTTCAAGATCGAGTTGAAATGCTGGGTTCTGTACCACATGC TCATGTACGCTCTGTCTTGATTTCTGGCCATATATTTCTAAACAGTTCTTTGACAGAGGCGTTCTGCATAGCCATATTAGAGGCTGCTAGTTGTGGGTTA TTAACAGTCAGCACACGCGTAGGAGGTGTACCTGAGGTTCTACCAGAGGACATGATTGTACTTGCAGAACCTGATCCTAGTGATATGGTAAGAGCAACCG GAAAGGCGATATCTCTACTTCCGAATATTGACCCACAACAGATGCATAATCGCATGAAGAAACTCTATGATTGGCATGATGTTGCAAAACGAACAGAGAT TGTTTATGACCGTGCTTTGAAATGTCCCGACCAAAATTTGTTAGAACGACTCTCACGGTACCTCTCTTGTGGTAGTTGGGCAGGCAAGATTTTCTGCTTC GTTATGATAATTGATTTCTTGCTATGGCGTCTGCTGCAACTATGGCAGCCAACAGAGGAGATTGAGGAGGTGCCTGAATTTACTTCACCCCGTCACCAAG ATGAGGAAATAATCTCAAATTTCAACTAG
AA sequence Show only first row Show all	>Potri.016G130000.8 pacid=42808993 polypeptide=Potri.016G130000.8.p locus=Potri.016G130000 ID=Potri.016G130000.8.v4.1 annot-version=v4.1 MADQKHRILMVSDFFFPNFGGVESHIYYLSQCLLKLGHKVVVMTHAYGNRSGVRYMTGGLKVYYVPWRPFLMQNTLPTVYGTLPIVRTILVREKISLVHG HQAFSTLCHEALMHARTMGYKVVFTDHSLYGFADIGSIHMNKVLQFTLADVSQAICVSHTSKENTVLRSGLPPEKVFMIPNAVDTAMFKPAPERLGNDEI IIVVISRLVYRKGADLLVEVIPEICRLYPNVRFIVGGDGPKRVRLEEMRERHSLQDRVEMLGSVPHAHVRSVLISGHIFLNSSLTEAFCIAILEAASCGL LTVSTRVGGVPEVLPEDMIVLAEPDPSDMVRATGKAISLLPNIDPQQMHNRMKKLYDWHDVAKRTEIVYDRALKCPDQNLLERLSRYLSCGSWAGKIFCF VMIIDFLLWRLLQLWQPTEEIEEVPEFTSPRHQDEEIISNFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Potri.016G130000 [exp]	0	1
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.002G257100 [exp]	1.73	0.8319
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Potri.008G068500 [exp]	5.91	0.8177
					Potri.005G156500 [exp]	6.92	0.8186
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Potri.009G147600 [exp]	7.74	0.8024
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Potri.013G094800 [exp]	8.83	0.8431
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.016G046802 [exp]	10.00	0.8110
AT5G24970			Protein kinase superfamily pro...		Potri.018G014000 [exp]	12.64	0.7588
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.011G163600 [exp]	13.41	0.7860
AT2G19390			unknown protein		Potri.018G056400 [exp]	14.49	0.7866
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Potri.006G240100 [exp]	16.52	0.7993

Compare expression of checked genes

Potri.016G130000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.