Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 181 / 6e-58 Protein of unknown function (DUF567) (.1) AT2G14560 165 / 2e-51 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G33840 163 / 2e-50 Protein of unknown function (DUF567) (.1) AT3G16900 117 / 4e-33 Protein of unknown function (DUF567) (.1) AT3G56180 113 / 3e-31 Protein of unknown function (DUF567) (.1) AT3G10986 108 / 1e-29 Protein of unknown function (DUF567) (.1) AT3G15810 86 / 1e-20 Protein of unknown function (DUF567) (.1) AT5G20640 64 / 3e-12 Protein of unknown function (DUF567) (.1) AT2G30270 60 / 3e-11 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G130500 [exp] 416 / 3e-150 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131850 [exp] 412 / 5e-149 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 384 / 6e-138 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 384 / 1e-137 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 321 / 6e-113 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 320 / 2e-112 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 310 / 2e-108 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 304 / 4e-106 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131600 [exp] 273 / 7e-94 AT5G01750 128 / 4e-37 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002477 [exp] 301 / 5e-105 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 301 / 5e-105 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 296 / 8e-103 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 272 / 3e-93 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014154 [exp] 259 / 2e-88 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10019896 [exp] 248 / 6e-84 AT5G01750 169 / 3e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 225 / 8e-75 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 199 / 2e-64 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 196 / 2e-63 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009094 [exp] 187 / 7e-60 AT5G01750 150 / 1e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF04525 [poplar] [flax] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Potri.016G130700.1 pacid=42810291 polypeptide=Potri.016G130700.1.p locus=Potri.016G130700 ID=Potri.016G130700.1.v4.1 annot-version=v4.1 ATGGCTACTGGGCAAGCACCAGGCAACCCCATTCCAGCTGTGAGAACATACCCGCCGGTGGAGCATCCAGTGGTAGTAATAGGGCCACAGTACCTGGCAC AGTACCCTGTTGAACTCGCCGTCTCTACAAAGCTATGGACTCTTGGAGAGAATGATTTTAAGGTGTCTGACATTAATGGCACCCTCATCTTCCAGGTCAA GAGTAAACTCTTAACCCTACATGATCGTCGTTTTCTGAAAGATGCAGCCGGTAACACCCTTGTCAATCTCAGGCAGAAGATAAGGACCATGCATCGGAGG TGGGAAGCTTTTAGAGGAGAAAGCAAGGAGGAGAAAGATTTGCTTTTCACAGCCAAGAAATCAAAGTTATTCCAATTCAAAACTGAGTTAGACATATTCT TGGCTAACAACAAAGGAGAGGTCCCTGATTTCAAGGTCAAGGGAGGGTACGGAGAGAGTTCCTGCTCTATACTTCTTGGAGATTCCAATGCCATGCTTGC ACAAATGCATAGATTACACTCTCTCACGACGATGATCTTGGATACAGATAGTTTTGGAGTGACTGTTTATCCTAATGTTGATTATGCCTTCATAGTAGCT CTTGTGGTGATTCTCGATGAGATCAATGCGGACCGTAGTGGCGAAGATTAA
AA sequence Show only first row Show all	>Potri.016G130700.1 pacid=42810291 polypeptide=Potri.016G130700.1.p locus=Potri.016G130700 ID=Potri.016G130700.1.v4.1 annot-version=v4.1 MATGQAPGNPIPAVRTYPPVEHPVVVIGPQYLAQYPVELAVSTKLWTLGENDFKVSDINGTLIFQVKSKLLTLHDRRFLKDAAGNTLVNLRQKIRTMHRR WEAFRGESKEEKDLLFTAKKSKLFQFKTELDIFLANNKGEVPDFKVKGGYGESSCSILLGDSNAMLAQMHRLHSLTTMILDTDSFGVTVYPNVDYAFIVA LVVILDEINADRSGED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01750			Protein of unknown function (D...		Potri.016G130700 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Potri.016G131701 [exp]	5.38	0.8968
AT2G26110			Protein of unknown function (D...		Potri.001G008080 [exp]	7.74	0.9336
AT1G03220			Eukaryotic aspartyl protease f...		Potri.013G070300 [exp]	8.12	0.9358
					Potri.002G122400 [exp]	10.39	0.9314
					Potri.002G155402 [exp]	14.00	0.8801
AT1G03220			Eukaryotic aspartyl protease f...		Potri.013G070325 [exp]	14.24	0.9258
					Potri.002G122200 [exp]	17.49	0.9091
AT3G10080			RmlC-like cupins superfamily p...		Potri.010G238100 [exp]	18.33	0.9199
AT4G08250	GRAS		GRAS family transcription fact...		Potri.005G190300 [exp]	20.49	0.9291	GRAS43
AT1G63410			Protein of unknown function (D...		Potri.001G106300 [exp]	22.00	0.9023

Compare expression of checked genes

Potri.016G130700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.