Plant FIBer expression Database

Potri.016G130950 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G130950.1 pacid=42810600 polypeptide=Potri.016G130950.1.p locus=Potri.016G130950 ID=Potri.016G130950.1.v4.1 annot-version=v4.1
ATGCTGCAACTGATGATTTCAGGGAATGAGAAGAGAAGTGAACATACATGGTTTTGGAGCGGAGAAGGCGATGGAGATGCTGTGTTCTCTGCTTCACCGT
GTCCTCTGCTTCCGTTCGGTTTGCTTCTGTTTCTCCTTCCTCTTCCTTTTGTTCTCTCTTTCTGCTCTGTCCCCCTCTACTCTGCTTGTTTTTCTGCTGT
CTTTTCCCTCTATGTTTCTGTTTTCTCCCTCTCAGTCTCTTCCTCTCTCCTTTTGTTCTCTTTCCCCCCCCGGCTACTCTCTGTTTTCTCTTTTTTTTTT
TCACGTTCTCTCCTCCTCTGTTCTCCCCGTGTTCTTTCTGCCCCTGCTCTCCCTTACTCTTCTTCTTTCTCCTCTCTCGATCTCCTCACTGTCTCATTAT
TATTTTTTTCTCTCCTTCTCTCCCTCTGTTTCCTGTCTATTTCGTTCTCCCTCCCTCCTTGTTCTTTCGGTGCAGAACATCCTCTGGCTTTTATAGCCAG
AGGATGCAACCGTTTTCCTTTGCAGGGACGGAATAACGGCCGGAGAGATATCAGCCGTGGAACATGGCCCCTTGATCACCGCCTTCGCTGCTGCAGCCGT
TTCTCCGCCAGCTGCACCGAAACGTAA
AA sequence
>Potri.016G130950.1 pacid=42810600 polypeptide=Potri.016G130950.1.p locus=Potri.016G130950 ID=Potri.016G130950.1.v4.1 annot-version=v4.1
MLQLMISGNEKRSEHTWFWSGEGDGDAVFSASPCPLLPFGLLLFLLPLPFVLSFCSVPLYSACFSAVFSLYVSVFSLSVSSSLLLFSFPPRLLSVFSFFF
SRSLLLCSPRVLSAPALPYSSSFSSLDLLTVSLLFFSLLLSLCFLSISFSLPPCSFGAEHPLAFIARGCNRFPLQGRNNGRRDISRGTWPLDHRLRCCSR
FSASCTET

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G130950
[exp]
0 1
AT3G62230 DAF1 DUO1-activated F-box 1, F-box ... Potri.001G420500
[exp]
7.21 0.7138
AT4G38040 Exostosin family protein (.1) Potri.007G117800
[exp]
11.48 0.6674
AT5G38450 CYP735A1 "cytochrome P450, family 735, ... Potri.017G114200
[exp]
15.49 0.6459 Pt-CYP735.1
AT5G52160 Bifunctional inhibitor/lipid-t... Potri.015G139100
[exp]
24.00 0.7143
AT5G63860 UVR8 UVB-RESISTANCE 8, Regulator of... Potri.005G068801
[exp]
27.34 0.6367
AT2G26530 AR781 Protein of unknown function (D... Potri.009G068200
[exp]
41.56 0.6745
Potri.003G162750
[exp]
92.86 0.5906
Potri.016G129050
[exp]
105.15 0.5954
AT4G22120 ERD (early-responsive to dehyd... Potri.004G005900
[exp]
177.27 0.5484

Potri.016G130950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.