Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 180 / 2e-57 Protein of unknown function (DUF567) (.1) AT1G33840 166 / 2e-51 Protein of unknown function (DUF567) (.1) AT2G14560 160 / 1e-49 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G16900 114 / 1e-31 Protein of unknown function (DUF567) (.1) AT3G56180 114 / 1e-31 Protein of unknown function (DUF567) (.1) AT3G10986 109 / 8e-30 Protein of unknown function (DUF567) (.1) AT3G15810 81 / 2e-18 Protein of unknown function (DUF567) (.1) AT5G20640 59 / 2e-10 Protein of unknown function (DUF567) (.1) AT5G41590 57 / 9e-10 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G131850 [exp] 390 / 6e-140 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 389 / 1e-139 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130700 [exp] 384 / 1e-137 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 351 / 8e-125 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 283 / 9e-98 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 283 / 1e-97 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 279 / 2e-96 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 266 / 4e-91 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131500 [exp] 244 / 7e-83 AT5G01750 139 / 2e-41 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002477 [exp] 271 / 4e-93 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 271 / 4e-93 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 265 / 1e-90 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 249 / 2e-84 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014154 [exp] 237 / 1e-79 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10019896 [exp] 222 / 1e-73 AT5G01750 169 / 3e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 195 / 7e-63 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 179 / 7e-57 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 179 / 1e-56 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009094 [exp] 166 / 7e-52 AT5G01750 150 / 1e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [poplar] [flax] Tubby_C PF04525 [poplar] [flax] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Potri.016G131800.1 pacid=42810589 polypeptide=Potri.016G131800.1.p locus=Potri.016G131800 ID=Potri.016G131800.1.v4.1 annot-version=v4.1 ATGGCTACTGGGCACGCACCAGGCAACCCCGTTCCAGCTGTGAGAACATACCCGCCGGTGGAGCATCCAGTGGTGGTAGTAGGGCCACAGTACCTGGCAC AGTACCCTGTTGAACTCGCCGTCTCTACAAAGCTATGGACTCTTGGAGAGAATGATTTTAAGGTGTCTGACATTAATGGCACCCTCATCTTCCAGGTCAA GAGTAAAGTATTAACCCTGCATGATCGTCGTTTTCTGAAAGATGCAGCTGGTAACACCCTTGTCAATCTCAGGCAGAAGATAATGAGCATGCATCGGAGG TGGGAGGCTTTTAGAGGAGAAAGCAAGGAGGAGAAAGATTTGCTTTTCACAGCCAAGAAATCAAAGCTGTACCAATTCAAGACTGAGTTAGACATATTCT TGGGTAAGAACAAAGGAAAGGTCCCTGATTTCAAGGTCAAAGGAGGCTACAGAGAGAGTTCCTGCTCTGTACTTCTTGGAGATTCCAATACCATGCTTGC ACAGATGCATAGAAAACACACTCTCGCGAGTACTATTTTGGCTACAGATAGTTTTGGAGTGACTGTGTATCCTAATGTTGATTATGCCTTCATAGCGGCT CTTGTGGTGATTCTCGACGAGATCAATGCGGATCGCAGTGGCGAAGATTAA
AA sequence Show only first row Show all	>Potri.016G131800.1 pacid=42810589 polypeptide=Potri.016G131800.1.p locus=Potri.016G131800 ID=Potri.016G131800.1.v4.1 annot-version=v4.1 MATGHAPGNPVPAVRTYPPVEHPVVVVGPQYLAQYPVELAVSTKLWTLGENDFKVSDINGTLIFQVKSKVLTLHDRRFLKDAAGNTLVNLRQKIMSMHRR WEAFRGESKEEKDLLFTAKKSKLYQFKTELDIFLGKNKGKVPDFKVKGGYRESSCSVLLGDSNTMLAQMHRKHTLASTILATDSFGVTVYPNVDYAFIAA LVVILDEINADRSGED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01750			Protein of unknown function (D...		Potri.016G131800 [exp]	0	1
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.014G091800 [exp]	14.56	0.7391
AT2G46940			unknown protein		Potri.002G185700 [exp]	33.52	0.7215
AT4G00300			fringe-related protein (.1.2)		Potri.014G088100 [exp]	35.09	0.7032
AT1G78230			Outer arm dynein light chain 1...		Potri.005G164000 [exp]	38.52	0.6413
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108500 [exp]	39.26	0.7193	LEA1.6
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Potri.002G098000 [exp]	44.07	0.6292
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.003G217950 [exp]	47.02	0.6575
AT5G08240			unknown protein		Potri.019G119000 [exp]	47.96	0.6377
AT3G24750			unknown protein		Potri.002G240300 [exp]	48.00	0.6584
AT3G14205			Phosphoinositide phosphatase f...		Potri.003G071300 [exp]	55.00	0.6399

Compare expression of checked genes

Potri.016G131800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.