Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38410 405 / 3e-132 ENTH/VHS/GAT family protein (.1) AT5G01760 319 / 1e-100 ENTH/VHS/GAT family protein (.1) AT4G32760 282 / 5e-85 ENTH/VHS/GAT family protein (.1.2) AT3G08790 253 / 6e-75 ENTH/VHS/GAT family protein (.1) AT1G21380 244 / 2e-72 Target of Myb protein 1 (.1) AT1G76970 233 / 4e-69 Target of Myb protein 1 (.1) AT5G63640 168 / 2e-45 ENTH/VHS/GAT family protein (.1) AT5G16880 121 / 3e-30 Target of Myb protein 1 (.1.2.3) AT1G06210 80 / 1e-15 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106500 [exp] 680 / 0 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.018G039100 [exp] 281 / 1e-84 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G241000 [exp] 271 / 5e-81 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 260 / 1e-78 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.002G075500 [exp] 259 / 5e-78 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.T010700 [exp] 171 / 2e-46 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 171 / 2e-46 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 166 / 8e-45 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.019G050000 [exp] 122 / 5e-30 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022753 [exp] 527 / 9e-180 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 522 / 8e-178 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 488 / 1e-163 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10022140 [exp] 278 / 4e-83 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10018948 [exp] 251 / 5e-76 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10028649 [exp] 256 / 9e-75 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10029739 [exp] 249 / 2e-74 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10042770 [exp] 245 / 6e-73 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10011689 [exp] 204 / 2e-56 AT3G08790 461 / 5e-154 ENTH/VHS/GAT family protein (.1) Lus10022667 [exp] 185 / 1e-51 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF00790 [poplar] [flax] VHS VHS domain CL0009 [poplar] [flax] PF03127 [poplar] [flax] GAT GAT domain
Representative CDS sequence Show only first row Show all	>Potri.016G131900.1 pacid=42810188 polypeptide=Potri.016G131900.1.p locus=Potri.016G131900 ID=Potri.016G131900.1.v4.1 annot-version=v4.1 ATGGCTCGTGCTATGGGGATGGGGATGGGTTTGGGTTCATCTTCTTCGGCAACTGTAGCGGTTGATAAAGCAACAAGCGATCTTTTAATCGGTCCTGATT GGACTATGAATATTGATATTTGTGATTCTGTTAATTCTAATTACTGGCAACCCAAGGATGTAGTGAAAGCTTTGAAAAAAAGGTTGCAGCACAAGAGCCC TAGAGTCCAACTACTTGCTTTGACGCTTTTGGAGACAATGGTGAAGAACTGTGGTGATTATGTCCATTTTCAAATTGCTGAAAGGAATATATTGGGGGAA ATGGTGAAAATCGTAAAGAAGAAGACAGATATGCATGTGAGAGATAAGATTCTGGCTTTGATTGATTCTTGGCAAGAGGCATTTGGCGGGCCTGGAGGAA AACACTCTCAATATTATTGGGCATACGAGGAATTAAGGCGTGCGGGAGTTCAATTTCCCCAGCGTTCATCAAATGCAGCTCCAATATTTACACCACCTGC AACCAATCCAACATTGAGGCATGCCCAACCTGGTTATGGAATGCCTAGCAATTCTTCTAGTAGACTCGATGAAACAATGGCCGCGGAGATTGAAGGCTTA AGTCTGTCAAGTTTGGATTCCATGCGGGATGTTATGGAGCTCTTGAGTGATATGCTTCAAGCTGTTAACCCTAGAGACCGTGAGGCTGTAAAAGATGAAG TTATAGTGGATCTTGTCAACCAGTGTCGATCCAACCAGAAAAAGTTGATGCAGATGCTAACTACAACTGGGGACGAGGAACTTCTTGGTAAGGGTCTTGA ACTAAATGACAGTATGCAAATCTTGCTTGCAAAACATGATGCTATTTCTTCTGGCTCTCCTATGCCAACTCAAGTTATAAGTTTAAGCCCCAAATCAAGT GAAGGATGTTCCTCTGACATCAAGCCAACTGAAGCAAGAGATGCCAGCCCAAGATCTACGACTAATTCTGCCATGCCAGTTGCTAATGTGACAAGGAGTG CAGTAGATGAAGAGGATGAAGAGGACGACTTTGCACAGCTTGCACGCAGGCATTCCAAAACACAGTCCGGTTCATCTCAAAGCTCAGGTGGAACAAATGG AGCTCTTGTGCCATTGGATGTCGGCATGCCCACTGCATCAACCTCTTCCCCAAGCAATTCTCTGGCACTTGCTGATCCATCTCTACCAGTTAAAACCATG AAAGATCAGGATATGATTGACTTTTTGAGCCTTGCCTTGTCAACAACATCAACCTCTCCTCCCACCCCTCCCACCCCACCAGTCTCCAACCAAGCCATGC CTCAGATACCTCCTTCCTCCAGCACACAAGGTTATCCCTATGTTTCTCAAACTTATCCTGTAAACCAAGGGCCTGTTCCATACAGCAGCTATGTCGTTCC ATGGGCCCAGCCTCAAACTCAGCAGCACCAATTACAATCTCCATCTCAAACCCAGTTACAGCCTCACTCTTACCAACATTTACGTCCTCCATCACGACCG CAGCAACAGTTGCAACCTGAACCCGAACAGCAATCAACGCCTCAGCCTCAGCAGCATTTGCAGCATCAATCTAAACCACAATTGCAACCTCAGTTCCAGC CACAGTTGCGACCTGAACCCCAGCAGCAATCAGTGCCTCAGCCTCAGCAGCATTTGCAGCATCAGTCCCAACCGCAATTACAACCTCAGTTCCAGCCACA GTTGCAGTCACAACATCCTCAACACTCATCTGTCTACCCACCTCCACCCTGGGCAGCTACACCTGGATATCTCAACAACCAAATTCACACATCCACTACA AATAACATGTTTTCATCCCCCCGATCCAACTCAGCTGCATCTTATACTCCCATGCAAGCAGCTAGACCTATGCAGCAATTTAATTCCCTTCCCACAAGAG TAGGCAATGGATCAATTATTAATGGTGATTCAAGTTCTGCTTCTAGGGTACCTGCACCTCCAGGACAAAAGCAGTCCTTTGTTCCCTCTTACAGGTTGTT TGATGATCTGAATGTTCTGGGAAATGCTGATGGAAGGTTTAAAATGAATGGTAGCACACCGCCAAGCTTATCAGGATCTTCTGGCCAAAGTATGGTGGGT GGAAGGAAGTGA
AA sequence Show only first row Show all	>Potri.016G131900.1 pacid=42810188 polypeptide=Potri.016G131900.1.p locus=Potri.016G131900 ID=Potri.016G131900.1.v4.1 annot-version=v4.1 MARAMGMGMGLGSSSSATVAVDKATSDLLIGPDWTMNIDICDSVNSNYWQPKDVVKALKKRLQHKSPRVQLLALTLLETMVKNCGDYVHFQIAERNILGE MVKIVKKKTDMHVRDKILALIDSWQEAFGGPGGKHSQYYWAYEELRRAGVQFPQRSSNAAPIFTPPATNPTLRHAQPGYGMPSNSSSRLDETMAAEIEGL SLSSLDSMRDVMELLSDMLQAVNPRDREAVKDEVIVDLVNQCRSNQKKLMQMLTTTGDEELLGKGLELNDSMQILLAKHDAISSGSPMPTQVISLSPKSS EGCSSDIKPTEARDASPRSTTNSAMPVANVTRSAVDEEDEEDDFAQLARRHSKTQSGSSQSSGGTNGALVPLDVGMPTASTSSPSNSLALADPSLPVKTM KDQDMIDFLSLALSTTSTSPPTPPTPPVSNQAMPQIPPSSSTQGYPYVSQTYPVNQGPVPYSSYVVPWAQPQTQQHQLQSPSQTQLQPHSYQHLRPPSRP QQQLQPEPEQQSTPQPQQHLQHQSKPQLQPQFQPQLRPEPQQQSVPQPQQHLQHQSQPQLQPQFQPQLQSQHPQHSSVYPPPPWAATPGYLNNQIHTSTT NNMFSSPRSNSAASYTPMQAARPMQQFNSLPTRVGNGSIINGDSSSASRVPAPPGQKQSFVPSYRLFDDLNVLGNADGRFKMNGSTPPSLSGSSGQSMVG GRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.016G131900 [exp]	0	1
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.017G088300 [exp]	1.00	0.9431
AT3G47940			DNAJ heat shock family protein...		Potri.015G066100 [exp]	2.00	0.9147
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.006G039000 [exp]	3.87	0.9055
AT3G42170			BED zinc finger ;hAT family di...		Potri.003G031700 [exp]	4.58	0.9038
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.001G362300 [exp]	4.69	0.8999	Pt-MRP3.1
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.003G210500 [exp]	5.00	0.8808
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	5.65	0.9107
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.013G048000 [exp]	7.21	0.8793
AT1G55000			peptidoglycan-binding LysM dom...		Potri.013G021600 [exp]	7.34	0.9046
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	10.19	0.9031

Compare expression of checked genes

Potri.016G131900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.