Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08850 1863 / 0 ATRAPTOR1B, RAPTOR1B HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G01770 1727 / 0 RAPTOR2, ATRAPTOR1A, RAPTOR1A RAPTOR2, HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G08390 64 / 8e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 59 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G40360 51 / 6e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 45 / 0.0006 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106600 [exp] 2300 / 0 AT3G08850 1968 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.008G002300 [exp] 62 / 2e-09 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 60 / 1e-08 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 50 / 2e-05 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025263 [exp] 2079 / 0 AT3G08850 2054 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10009083 [exp] 2045 / 0 AT3G08850 2031 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10014156 [exp] 1352 / 0 AT3G08850 1330 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10022752 [exp] 610 / 0 AT3G08850 630 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10014157 [exp] 172 / 8e-49 AT3G08850 160 / 9e-46 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10013452 [exp] 64 / 1e-09 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 63 / 1e-09 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026094 [exp] 52 / 2e-06 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10002324 [exp] 48 / 4e-05 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10023107 [exp] 47 / 0.0002 AT2G40360 937 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [poplar] [flax] Peptidase_CD PF14538 [poplar] [flax] Raptor_N Raptor N-terminal CASPase like domain
Representative CDS sequence Show only first row Show all	>Potri.016G132000.1 pacid=42809648 polypeptide=Potri.016G132000.1.p locus=Potri.016G132000 ID=Potri.016G132000.1.v4.1 annot-version=v4.1 ATGGCATTGGGAGATTTAACGGCGTCAAGACTCTCCTCACAATCATCAGTTGCTTTGATTTCCAACCATTACGATGATTTTCCGTCAAGTCACGGAGACG ACGCTCTTGATTCAGCAAGAAGAGATAATAACAGTGATTCTAATCATAATAGCAGCAGCAGCAGCATCAATAATAATAGAGATAGAGATTCTGATATTGC TAGCACTAGTAATTACGGCGGGGGCAATGCGACGACAGGAAGTACAGCCGCGACGACGACTAGTATGGCGTATTTGCCTCAGAGTGCTGTTTTGAGTGAG CTTAGACATGAGGCATTTGAAGCTTCAGTGCCTACTGGTCCGTCTGATAGTGGACCTGTTTCAAAATGGCGGCCAAAGGACAGAATGAAGACTGGTTATG TAGCTCTAGTTTTATGTTTAAACATCAGTGTTGATCCTCCGGATGTAATAAAGATATCCCCCTGTGCCAGAATGGAATGCTGGATAGATCCATTTTCAAT GGCACCTCAAAAAGCTCTTGAAACAATTGGAAAAAGCTTGAGCATTCAGTATGAAAGGTGGCAACCTAAGGCTCGCTACAAGATTCAACTTGATCCCACA GTTGATGAAGTGAAGAAACTATGTAATACATGCCGAAAACATGCCAAGTCCGAGAGAGTTCTGTTTCATTACAATGGGCACGGTGTTCCAAAGCCAACTG CTAATGGTGAAATCTGGCTTTTCAATAAGAGCTATACACAATATATTCCCTTGCCAATCAGTGATCTTGATTCCTGGCTAAGAACACCATCAATCTATGT TTTTGACTGCTCTGCTGCTGGGATGATAGTCAATGCATTTCTAGAGCTTCATGACTGGAGTGCTTCTGGCTCTGCTGGGTCTGTGAGCAATTGCATTCTG CTCGCAGCCTGTGAAGCACATGAGACTTTGCCACAAAGTGATGAATTTCCAGCTGATGTGTTCACTTCATGCCTCACCACTCCTATCAAGATGGCATTGA AATGGTTTTACAGACGTTCACTTCTTTGTGACTCTCTTGACTACTCATTAATTGATAAAATTCCTGGCCGGCAAAATGATCGTAAAACACTTCTGGGAGA ATTGAACTGGATCTTTACTGCAGTGACAGACACTATTGCTTGGAATGTTCTTCCCCGTGATCTTTTTCAGAAGTTGTTCAGACAAGATTTGTTAGTTGCC AGTCTGTTCAGAAATTTCTTACTTGCTGAAAGAATTATGCGTTCGGCAAATTGTTCGCCGATTTCTCACCCAATGTTGCCACCAACCCATCAGCATCATA TGTGGGATGCATGGGATATGGCTGCTGAAATTTGCCTCTCACAGCTTCCATCTATGGTCGAGGACCCTAATTCAGAATTCCAGCCGAGTCCTTTTTTTAC TGAACAACTGACAGCTTTTGAGGTGTGGTTGGACCATGGCTCTGAACATAAGAAGCCACCTGAGCAGTTACCTATTGTTCTTCAGGTTCTGCTTAGTCAA AGCCATCGGTTCCGGGCACTGGTCCTTCTGGGGAGATTCCTTGATATGGGACTTTGGGCAGTAGATCTGGCTTTATCTGTTGGAATATTTCCATATGTTT TGAAGCTGTTGCAAACAACAACACCAGAACTAAGGCAAATTCTTGTATTCATATGGACAAAAATTCTAGCACTTGATAAGTCATGCCAGGTTGACCTTGT CAAGGATGGGGGACATACATATTTTATTAGGTTTCTCGATAGCTTGGAAGCATATCCAGAACAGCGGGCAATGGCTGCATTTGTTTTGGCTGTTATTGTT GATGGGCACAGACGGGGCCAGGAAGCCTGTATTGAAGCTGGTTTAATTCATGTGTGCTTGAGGCACTTACGAGGATCAGTGCCAATTGATGCACAAACTG AACCTTTGTTTCTTCAGTGGCTTTGCCTCTGCCTGGGAAAGCTGTGGGAAGATTTCACAGAGGCTCAGATGCTAGGTTTGCAGGCTGATGCCCCTGCCAT ATATGCTCCTCTACTGTTGGTGCCCCAACCAGAGGTTAGGGCTTCTGCTGCATTTGCACTGGCCACCTTGCTTGATGTTGGCGGTGATGTCTGCAGAGAT GGTGTTCATGGAGATGATGAGTGTGATGATGATGAAAAAGTTAGAGCTGAAGTTAGTATTATTAGAAGTCTATTAAGCGTTGTGTCAGATGGAAGTCCAC TGGTTAGGGCAGAGGTTGCTGTAGCTCTGGCACGCTTTGCATTTGGCCACAAACAGCACCTCAAGTCAATTGCTGCCTCATATTGGAAACCTCAGTCTAA TTCTCTGCTCAATTCATTACCTTCTTTGGTCCATATAAAAGCTACAGGTAGCGGATACATCAACCCAAATCAGCATGTGCCACATGCAAGTATTGTTTCA TCTCAAATTGGCCCTTTGACAAGAGTTGGTAGTGACAACCCATCTGTGGTTCGAGATGGAAGGGTATCCACTAGTAGTCCTCTTACTACAGCTGGAATCA TGCATGGATCACCTTTATCTGATGATTCATCTCAGCATTCCAATTCTGGTATATTGAATGGCATTGTTAGCAATGGGGCAGTAAACCATTCAAGGCCAAA GCCACTAGATAATGCATTATATTCCCAGTGTGTACTAGCTATGTGCACTTTGGCCAAGGATCCTTCTCCACGCATAGCAAGCCTTGGTCGAAGTGTACTG TCTATTATTGGGATTGAGCAAGTGGTGACAAAATCTGTAAATTCTGCTGGTAGTAGTGGGCGCCCACGCCCTGGTGATCCAAAAACTTCATCTCCATATC CAAGTGTTGCTGGGATGACTCGTTCATCATCTTGGTTTGACATGAATGCAGGTCATCTACCATTCAGAACTCCTCCTGTCAGCCCTCCTCGACCAAGTTA CTTAACAGGAATGCGTAGAGTGTGTTCTTTGGATTTCAGGCCACACCTTATGAATTTTCCAGATTCAGGATTAGCAGATCCTCTTTTGGGTTCTGTTTCA TCTTCTGGAGGCACAGAACGCAGTTTACTTCCTCAGTCAACCATCTACAAATGGAGTTGTGGTCACTTCTCAAAGCCACTTCTCACTGTGCCAGATGATA CTGAAGAAATATTAGTTAGAAGAGAAGAGAGGGAAAAATATGCACTGGAGCACATTGCAACGTGCCAGCACTCCTCTGGTAGCAACCTTAAAAATAGAAT TGCTAATTTGGATACGAAGTTTGAAACTGGTACAAAGACAGCCTTGCTGCAGCCTTTCTCTCCAATTGTGGTTGCTGCTGATGAGAATGAACGGATTAGG GTATGGAATTATGAGGAAGCTAACCTTCTCAATGGGTTTGACAATCATGATTTTCCAGACAAGGGAATTTCTAAGCTGTGTCTTGTAAACGAGCTTGATG ACAGTTTACTTCTTGTTGCTTCATGTGATGGAAATATACGAATTTGGAAAGACTACACTGTGTATGGTAAGCAAAAGCTTGTCACTGCATTTTCTTCAAT CCAAGGTCATAAACCCGGTGTGCGGAGTTTGAATGCTGTTGTGGACTGGCAACAACAATCAGGATATCTGTATGCTTCTGGTGAGATATCATCCATCATG CTGTGGGACCTGGATAAAGAGCAGCTTATTCATTCCATTCCTTCGTCTTCAGATTGCAGCGTCTCAGCAATGTCTGCTTCTGAAGTTCATGGAGGTCAAT TTGCTGCCGGTTTTGTGGATGGATCTGTCAAACTCTATGATGTCCGGATACGTGAAATGCTTGTTTGTGCTAGTCGGCCACACACTGAGAATGTAGTAAG AGTTGTGGGGATTGGCTTTCAACCTGGGCTTGATCCTGGAAAGATTGTCAGTGCATCTCAGGCTGGTGACATGCAGTTCCTGGATATGAGAAATCTTATG AATCCCTATCTCACGATCAAGGCCCACAGGGGCTCACTCACAGCTTTATCTGTTCATAGGCATGCCCCTATTATTGCCAGCGGGTCAGCAAAACAAATTA TTAAATTATTCAGTCTAAATGGTGAGCAATTAGACTCCATTACATACCACCTAACCATCATGGGCCAGAAGATCAGTCCTGTAAGCTGCCTCACCTTCCA TCCTTACCAAGTACTCCTTGCTGCTGGTGCTACTGATGCTCTATTCTCAATCTATGCCGATGACAACACTCAAGCAAGATGA
AA sequence Show only first row Show all	>Potri.016G132000.1 pacid=42809648 polypeptide=Potri.016G132000.1.p locus=Potri.016G132000 ID=Potri.016G132000.1.v4.1 annot-version=v4.1 MALGDLTASRLSSQSSVALISNHYDDFPSSHGDDALDSARRDNNSDSNHNSSSSSINNNRDRDSDIASTSNYGGGNATTGSTAATTTSMAYLPQSAVLSE LRHEAFEASVPTGPSDSGPVSKWRPKDRMKTGYVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALETIGKSLSIQYERWQPKARYKIQLDPT VDEVKKLCNTCRKHAKSERVLFHYNGHGVPKPTANGEIWLFNKSYTQYIPLPISDLDSWLRTPSIYVFDCSAAGMIVNAFLELHDWSASGSAGSVSNCIL LAACEAHETLPQSDEFPADVFTSCLTTPIKMALKWFYRRSLLCDSLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAWNVLPRDLFQKLFRQDLLVA SLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWDMAAEICLSQLPSMVEDPNSEFQPSPFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQ SHRFRALVLLGRFLDMGLWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIV DGHRRGQEACIEAGLIHVCLRHLRGSVPIDAQTEPLFLQWLCLCLGKLWEDFTEAQMLGLQADAPAIYAPLLLVPQPEVRASAAFALATLLDVGGDVCRD GVHGDDECDDDEKVRAEVSIIRSLLSVVSDGSPLVRAEVAVALARFAFGHKQHLKSIAASYWKPQSNSLLNSLPSLVHIKATGSGYINPNQHVPHASIVS SQIGPLTRVGSDNPSVVRDGRVSTSSPLTTAGIMHGSPLSDDSSQHSNSGILNGIVSNGAVNHSRPKPLDNALYSQCVLAMCTLAKDPSPRIASLGRSVL SIIGIEQVVTKSVNSAGSSGRPRPGDPKTSSPYPSVAGMTRSSSWFDMNAGHLPFRTPPVSPPRPSYLTGMRRVCSLDFRPHLMNFPDSGLADPLLGSVS SSGGTERSLLPQSTIYKWSCGHFSKPLLTVPDDTEEILVRREEREKYALEHIATCQHSSGSNLKNRIANLDTKFETGTKTALLQPFSPIVVAADENERIR VWNYEEANLLNGFDNHDFPDKGISKLCLVNELDDSLLLVASCDGNIRIWKDYTVYGKQKLVTAFSSIQGHKPGVRSLNAVVDWQQQSGYLYASGEISSIM LWDLDKEQLIHSIPSSSDCSVSAMSASEVHGGQFAAGFVDGSVKLYDVRIREMLVCASRPHTENVVRVVGIGFQPGLDPGKIVSASQAGDMQFLDMRNLM NPYLTIKAHRGSLTALSVHRHAPIIASGSAKQIIKLFSLNGEQLDSITYHLTIMGQKISPVSCLTFHPYQVLLAAGATDALFSIYADDNTQAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Potri.016G132000 [exp]	0	1
AT3G12590			unknown protein		Potri.010G207900 [exp]	4.24	0.8159
AT4G39160	MYB		Homeodomain-like superfamily p...		Potri.010G019600 [exp]	5.56	0.8513
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.010G150000 [exp]	8.83	0.8395
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.017G149500 [exp]	10.58	0.8420
AT3G01720			unknown protein		Potri.001G336400 [exp]	12.96	0.8066
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Potri.006G085700 [exp]	16.73	0.8254
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	19.59	0.8327
AT1G24300			GYF domain-containing protein ...		Potri.001G326700 [exp]	20.00	0.8330
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	22.18	0.8380
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.005G021700 [exp]	23.66	0.8300

Compare expression of checked genes

Potri.016G132000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.