Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AGT3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38400 770 / 0 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT3G08860 760 / 0 PYD4 PYRIMIDINE 4 (.1) AT4G39660 657 / 0 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT1G80600 188 / 2e-54 WIN1 HOPW1-1-interacting 1 (.1) AT5G46180 145 / 2e-38 DELTA-OAT ornithine-delta-aminotransferase (.1) AT3G22200 145 / 4e-38 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT3G48730 95 / 7e-21 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G63570 88 / 2e-18 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106800 [exp] 928 / 0 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.007G085600 [exp] 662 / 0 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.007G080000 [exp] 232 / 2e-74 AT4G39660 278 / 5e-93 alanine:glyoxylate aminotransferase 2 (.1) Potri.005G082100 [exp] 200 / 1e-61 AT4G39660 219 / 1e-69 alanine:glyoxylate aminotransferase 2 (.1) Potri.017G053500 [exp] 189 / 1e-54 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.005G095800 [exp] 181 / 2e-51 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.011G082800 [exp] 150 / 4e-40 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.006G020900 [exp] 148 / 6e-39 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.016G018500 [exp] 147 / 1e-38 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025262 [exp] 748 / 0 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10004480 [exp] 657 / 0 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10029922 [exp] 652 / 0 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10009086 [exp] 642 / 0 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1) Lus10008025 [exp] 183 / 2e-51 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10031196 [exp] 181 / 2e-51 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 146 / 2e-38 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10010465 [exp] 145 / 6e-38 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10003810 [exp] 145 / 6e-38 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10038510 [exp] 144 / 7e-38 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00202 [poplar] [flax] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Potri.016G132200.1 pacid=42810508 polypeptide=Potri.016G132200.1.p locus=Potri.016G132200 ID=Potri.016G132200.1.v4.1 annot-version=v4.1 ATGCAGAGATTTATAGCCAAAAGGGTATTATCGTCAACAAATTCTCTGCGTTCTCATCGCTGCTTCTCTCAACTTGCCCAAAAACAAACCTCCTTCGCCG TTCATGATAATGATATCCCTGTTCCCAAACTACCCCCATTCGATTATTCCCCTCCTCCTTACACTGGTCCTTCCGCCGACCTAATCTTGGCTAAACGCAA ACAATATCTCAGCCCTTCTTTGTTTCACTTCTTCAGTAAACCCTTAAACGTGGTTGATGGAAAGATGCAGTATCTATTCGATGAGAACGGCCGTAGATAC CTTGATGGTTTTGGAGGTATTGCTACGGTGTGTTGCGGCCATTGTCATCCTGACGTGGTTGATGCAATTGTCAAACAAGTCAACCGTATACAGCACTCTA CTGTTCTTTACCTCAATCATGTCATTGCTGATTTCGCCGAGGCCTTAGCCTCCAAAATGCCTGGAAACCTTAAAGTGGTGTTTTTTACGAATTCCGGGAC GGAGGCGAATGAACTGGCGTTGATGATAGCAAGATTGTATACGGGTTGTCAAGATATAATATCGTTGAGGAATGGTTATCATGGGAATGCAGCTGGGACT ATGGGGGCTACAGCACAGTCTCTTTGGAAATTTAATGTTATTCAGAGTGGAGTCCATCATGCATTGAACCCAGATCCATACAGAGGAGTATTCGGTTCAG ATGGAGAGATGTATGCAAAAGATGTCCAAGATATTATTGACTTTGGGACTTCTGGTCATGTTGCTGGATTTATATCTGAAGCTATCCAGGGAGTGGGAGG AATTATAGAATTGGCCCCGGATTACTTGCCTGCGGCTTATAAAAGTATCAAGAAAGCAGGAGGCCTTTGTATTGCTGACGAGGTTCAGGCTGGGTTTGGA CGCACGGGGAGTCATTTCTGGGGATTTGAGGCCCAGGGTGTTGTTCCTGACATTGTGACAATGGCAAAGGGGATTGGGAATGGCATTCCTCTTGGTGCTG TGGTGACCACCCCCGAAATTGCAGAAGTCTTGACTCGTCGTTGTTACTTCAACACATTTGGAGGAAATCCTTTATGTACCGCTGCGGGTCTGGCAGTTTT GAAAGTGATCGAGAAAGAAAATCTTCAGGAAAATGCACTAGTGGTGGGGTCCCATCTGAAAAAGAGACTGACTGAACTCAAGGATAAATATGAAATCATT GGAGATGTGAGGGGAAAAGGATTGATGCTCGGTGTTGAACTTGTAACTGACCGCCAACAGAAAACTCCAGCAAAGGCTGAAACTCTGCATGTAATGGAGC AGATGAAAGAACTGGGGGTCTTGATTGGGAAAGGCGGATTCTATGGCAACGTTTTTAGAATTACACCTCCGCTATGCTTTACTAAAGAAGATGCAGATTT CCTTGTGGATGCGATGGATTACACAATGTCAAAGATGTGA
AA sequence Show only first row Show all	>Potri.016G132200.1 pacid=42810508 polypeptide=Potri.016G132200.1.p locus=Potri.016G132200 ID=Potri.016G132200.1.v4.1 annot-version=v4.1 MQRFIAKRVLSSTNSLRSHRCFSQLAQKQTSFAVHDNDIPVPKLPPFDYSPPPYTGPSADLILAKRKQYLSPSLFHFFSKPLNVVDGKMQYLFDENGRRY LDGFGGIATVCCGHCHPDVVDAIVKQVNRIQHSTVLYLNHVIADFAEALASKMPGNLKVVFFTNSGTEANELALMIARLYTGCQDIISLRNGYHGNAAGT MGATAQSLWKFNVIQSGVHHALNPDPYRGVFGSDGEMYAKDVQDIIDFGTSGHVAGFISEAIQGVGGIIELAPDYLPAAYKSIKKAGGLCIADEVQAGFG RTGSHFWGFEAQGVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLTRRCYFNTFGGNPLCTAAGLAVLKVIEKENLQENALVVGSHLKKRLTELKDKYEII GDVRGKGLMLGVELVTDRQQKTPAKAETLHVMEQMKELGVLIGKGGFYGNVFRITPPLCFTKEDADFLVDAMDYTMSKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38400		AGT3	alanine:glyoxylate aminotransf...		Potri.016G132200 [exp]	0	1	AGT3.1
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Potri.010G186700 [exp]	1.41	0.8873
AT5G46295			unknown protein		Potri.011G079900 [exp]	1.73	0.8961
AT1G05710	bHLH	bHLH153	basic helix-loop-helix (bHLH) ...		Potri.013G126800 [exp]	2.44	0.8842
AT1G21890			nodulin MtN21 /EamA-like trans...		Potri.002G085100 [exp]	2.44	0.8633
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.015G029200 [exp]	4.58	0.8577
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.018G083700 [exp]	7.34	0.8045
AT2G37900			Major facilitator superfamily ...		Potri.006G092000 [exp]	9.38	0.8153
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Potri.004G212200 [exp]	9.74	0.8028
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G237100 [exp]	13.41	0.8640
AT5G43150			unknown protein		Potri.003G187500 [exp]	13.85	0.7923

Compare expression of checked genes

Potri.016G132200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.