Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01780 307 / 1e-101 2-oxoglutarate-dependent dioxygenase family protein (.1.2) AT3G14160 304 / 2e-99 2-oxoglutarate-dependent dioxygenase family protein (.1) AT3G14140 242 / 2e-75 2-oxoglutarate-dependent dioxygenase family protein (.1) AT1G11780 52 / 5e-07 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G070100 [exp] 319 / 5e-105 AT3G14160 348 / 2e-115 2-oxoglutarate-dependent dioxygenase family protein (.1) Potri.003G171900 [exp] 55 / 4e-08 AT1G11780 468 / 3e-166 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025260 [exp] 342 / 3e-115 AT3G14160 308 / 8e-102 2-oxoglutarate-dependent dioxygenase family protein (.1) Lus10033471 [exp] 282 / 9e-92 AT3G14160 305 / 2e-100 2-oxoglutarate-dependent dioxygenase family protein (.1) Lus10009087 [exp] 190 / 2e-59 AT5G01780 176 / 1e-54 2-oxoglutarate-dependent dioxygenase family protein (.1.2) Lus10037023 [exp] 56 / 2e-08 AT1G11780 472 / 3e-168 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10015782 [exp] 55 / 6e-08 AT1G11780 473 / 8e-169 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF13532 [poplar] [flax] 2OG-FeII_Oxy_2 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Potri.016G132300.2 pacid=42809644 polypeptide=Potri.016G132300.2.p locus=Potri.016G132300 ID=Potri.016G132300.2.v4.1 annot-version=v4.1 ATGGTCTTTATGTACCGTCTAATTAAAGCAAAAACTTTCCTACTATTGACATCACCAGTGCCTGTGCCCTACATTTCCCGCCAAATTTGTTCTGGGCTTC TCTCAATCAGAAAGATGAATGGTGGAAAAGACAGCGTAAGTGAAGATTCAATGCCCGGTAGAGGGGGAGCTGGCATCAAGTTGAGGCCTTCGCCTGATTG TATTGATCGGAGAGAATGTAGGGGTGCCGTGGAAACTAGTAGCGATAGTTTAGGTGTTAGGCATGGAAGTTTCGGTAAAAGGAGAAGTAGAATTGATCTT CGATCAGAGCAGAGGAGTGGGGATGGTAACTCATCGAAATTCGGGAACAAGAACATTCCTGCTCATGTTAAAAGATCTAAATCTGGCCAGAGTTATCGCA AGCCTGATGAAGGTGGCAATCATGTTGCACCATTTGATATCTGCCTTTCTGGGAGTAGAGATTCTGCTGTTTTGAAGTCCTTGCAGGAAATGGAGGAAAA TCAGGAAAATGTTGAACATCCCATTGAAGAGAGTGGTGGACAAGGAGTGTTGCGGCCTGGGATGGTTCTTCTAAAACGTTATATTTCCCTCGGTGATCAG ATTGAAATGGTGAAGACTTGCCGAGAAATTGGTCTGGGCCCTGGGGGATTTTATAGGCCTGGTTACAAAAATGGAGCAAAGCTTCGTCTGCAGATGATGT GTCTTGGTTTGAACTGGGATCCTGAGACAAGAAAATATGAAGATCGAAGCCCAGCTGACGGTTGTAAGCCTCCTTGTATTCCTCGTGAATTTAATCAGTT GGTTGAAACAGCAATTCAAGATGCGCATGGTCTTCTAGGAAAGGACTGTACATTAAGCAATGTGGAAGACGTGCTTAAGGTCTGTACATTAAGCAATGTG GAAGACATGCTTCCCACGATGTCTCCAGACATATGCATCGTGAACTTCTACACAACCAACGGGCGGCTTGGGCTCCATCAGGATCGTGATGAAAGCTCAG AGAGTCTTGACAAAGGATTGCCTGTTGTCTCCTTCTCAGTAGGGGATTCTGCAGAATTTCTCTATGGGGATCAGAGGGATGTGAACAAGGCAGATAAAGT TGTATTGGAATCAGGAGATGTGTTGATATTTGGTGGCAAGTCTAGACATATATTTCATGGCGTAACATCTGTAATCCCAAATTCTGCCCCCAAGGCTTTA ATTGAAGAAACCAGGCTTCGTCCTGGCCGTCTCAATCTTACGTTCAGACAGTACTAG
AA sequence Show only first row Show all	>Potri.016G132300.2 pacid=42809644 polypeptide=Potri.016G132300.2.p locus=Potri.016G132300 ID=Potri.016G132300.2.v4.1 annot-version=v4.1 MVFMYRLIKAKTFLLLTSPVPVPYISRQICSGLLSIRKMNGGKDSVSEDSMPGRGGAGIKLRPSPDCIDRRECRGAVETSSDSLGVRHGSFGKRRSRIDL RSEQRSGDGNSSKFGNKNIPAHVKRSKSGQSYRKPDEGGNHVAPFDICLSGSRDSAVLKSLQEMEENQENVEHPIEESGGQGVLRPGMVLLKRYISLGDQ IEMVKTCREIGLGPGGFYRPGYKNGAKLRLQMMCLGLNWDPETRKYEDRSPADGCKPPCIPREFNQLVETAIQDAHGLLGKDCTLSNVEDVLKVCTLSNV EDMLPTMSPDICIVNFYTTNGRLGLHQDRDESSESLDKGLPVVSFSVGDSAEFLYGDQRDVNKADKVVLESGDVLIFGGKSRHIFHGVTSVIPNSAPKAL IEETRLRPGRLNLTFRQY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01780			2-oxoglutarate-dependent dioxy...		Potri.016G132300 [exp]	0	1
AT5G05670			signal recognition particle bi...		Potri.002G020900 [exp]	2.00	0.7902
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Potri.017G018400 [exp]	3.16	0.7807
AT3G03305			Calcineurin-like metallo-phosp...		Potri.010G180800 [exp]	4.89	0.7672
AT1G31175			unknown protein		Potri.015G121500 [exp]	5.47	0.7784
AT5G25360			unknown protein		Potri.018G130900 [exp]	9.79	0.7840
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Potri.001G107200 [exp]	11.00	0.8006
AT4G22758			unknown protein		Potri.001G116200 [exp]	12.84	0.7066
AT5G17210			Protein of unknown function (D...		Potri.019G048300 [exp]	16.43	0.7245
AT1G33500			unknown protein		Potri.013G095400 [exp]	24.41	0.7823
AT1G56220			Dormancy/auxin associated fami...		Potri.013G014900 [exp]	25.45	0.7072

Compare expression of checked genes

Potri.016G132300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.