Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51710 464 / 3e-161 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78850 93 / 3e-20 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78860 92 / 5e-20 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT4G32300 89 / 1e-18 SD2-5 S-domain-2 5 (.1) AT5G03700 86 / 1e-17 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G16905 82 / 1e-16 Curculin-like (mannose-binding) lectin family protein (.1) AT5G35370 79 / 2e-15 S-locus lectin protein kinase family protein (.1) AT4G00340 68 / 7e-12 RLK4 receptor-like protein kinase 4 (.1) AT1G78830 67 / 1e-11 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78820 66 / 3e-11 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110300 [exp] 99 / 2e-22 AT1G78860 404 / 1e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110500 [exp] 97 / 2e-21 AT1G78850 404 / 8e-139 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.010G005900 [exp] 96 / 2e-21 AT1G78850 371 / 1e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.001G391300 [exp] 94 / 1e-20 AT1G78850 391 / 2e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110000 [exp] 94 / 1e-20 AT1G78850 424 / 1e-146 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.008G016900 [exp] 91 / 1e-19 AT5G03700 479 / 2e-166 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110200 [exp] 91 / 1e-19 AT1G78860 398 / 4e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.001G006100 [exp] 81 / 7e-16 AT2G41890 389 / 1e-123 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) Potri.016G102900 [exp] 80 / 1e-15 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009088 [exp] 452 / 8e-156 AT3G51710 360 / 1e-119 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10000579 [exp] 106 / 8e-25 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10022495 [exp] 101 / 4e-23 AT1G78860 363 / 1e-122 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10025258 [exp] 90 / 3e-21 AT3G51710 82 / 4e-19 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10002917 [exp] 88 / 3e-18 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 87 / 7e-18 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10023868 [exp] 77 / 7e-15 AT5G03700 458 / 3e-158 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10043391 [exp] 76 / 2e-14 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10039315 [exp] 76 / 4e-14 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10014371 [exp] 72 / 2e-13 AT5G03700 469 / 2e-162 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.016G132500.1 pacid=42810263 polypeptide=Potri.016G132500.1.p locus=Potri.016G132500 ID=Potri.016G132500.1.v4.1 annot-version=v4.1 ATGAAGCTCCATCAGCTCGTTTTTCTTGTTCTTCTGTTGGCTTATCAGGTCTATTGCAAAACATACATTCACATTGACTATAGCCTCACAGTAGAAGTAC CTAGTGAGTACAGTGTGGAATTACTAGGAAGAGCATTTCTGATGGAGACTGACCAAATGGAGCCCGATTTTAGAGTAGCATTGAGTGTTGAACCAATTAG AGGAAAATATTCATGTTCCTTGGAAGTCTTTCTTGGAGATGTTAAGGTGTGGAATTCTGGCCATTATTCTCATTTTTACACTTCTGATACATGTGTGCTT GCGCTGACAGAGGATGGAGATTTACACTTGAAAGGTTCGAATGATCGAATCGGATGGCGAACAGGGACTTCAGGACAAGGTGTGGAGAGACTACAGATTC TGAAGACGGGCAATTTAGTCCTTGTTGATGCCTTGAACCGGATAAAGTGGCAGAGTTTCAACTTTCCGACTGATGTAATGCTATGGGGACAGAGACTAAA TGTGGCCACTCGCTTGACATCTTTTCCTACCAATTCAACAGCATTCTATTCTTTTGAGATTCAGCACAACAAGATTGCTCTCTACCTGAGTTCTGGTAAG TGGAACTATTCTTACTGGGAATTTCAGCCTACCAAGAACAGAAACATCACATTTATTGAATTAGGTTCAAAAGGGTTAGAAATATTCAATGATAAATACA AGAAAATTGCGCAGATTTTATCATTCGGGATGCAATTTCAACCCCTAAGATTCTTAGCACTGGGGAATAAAACAGGAAACATGGGGCTGTATTTTTACTC CCCGGAGAAACGAAGTTTTGAGGCTGCTTTTCAAGCACTCAATACTACATGTGATCTTCCTCTAGCTTGTAGACCTTATGGTATCTGTACCTTGTCCAAT GCTTGCTCATGTATCCGACTGTTGACAGCGAAAAAAGGGGTTGGTTCAGATTGCAATGGGGGGTTTTCTGAAGGGTTTTGTGACAGAGAACAGCAGGAAA TGCTTGAACTAAGTGGTGTAAGTAGTGTTCTAAGGACTGCTCCTAAGAGGGTCAATGTTAGCAAAGAAGTATGTGAAGACTTATGCCTACAAGATTGTAA ATGTGCTGCTGCATTATATTCTACTGGCGAGGATGGCACAAGCTTCAGAGAATGCTTTACTTATGGACTGGTCTCAGGTGTTAAGCAGGTTGAAAGGGGA ACAGGATTGACTTACATGGTTAAGGTTCCAAAAGGAACCCAGATTTCCCATGGGAAATCAAATGTGAAGAAATGGGTGTTGGTCATGGTAGGAGTGATTG ATGGTTTCATTATCCTGCTTGTTTTTGGAGGGCTTGGGTATTATTTGGTTCAGAGAAGAAGAAGAAGAAACGTGCTTGCCTCTGACAACAATACTTAG
AA sequence Show only first row Show all	>Potri.016G132500.1 pacid=42810263 polypeptide=Potri.016G132500.1.p locus=Potri.016G132500 ID=Potri.016G132500.1.v4.1 annot-version=v4.1 MKLHQLVFLVLLLAYQVYCKTYIHIDYSLTVEVPSEYSVELLGRAFLMETDQMEPDFRVALSVEPIRGKYSCSLEVFLGDVKVWNSGHYSHFYTSDTCVL ALTEDGDLHLKGSNDRIGWRTGTSGQGVERLQILKTGNLVLVDALNRIKWQSFNFPTDVMLWGQRLNVATRLTSFPTNSTAFYSFEIQHNKIALYLSSGK WNYSYWEFQPTKNRNITFIELGSKGLEIFNDKYKKIAQILSFGMQFQPLRFLALGNKTGNMGLYFYSPEKRSFEAAFQALNTTCDLPLACRPYGICTLSN ACSCIRLLTAKKGVGSDCNGGFSEGFCDREQQEMLELSGVSSVLRTAPKRVNVSKEVCEDLCLQDCKCAAALYSTGEDGTSFRECFTYGLVSGVKQVERG TGLTYMVKVPKGTQISHGKSNVKKWVLVMVGVIDGFIILLVFGGLGYYLVQRRRRRNVLASDNNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51710			D-mannose binding lectin prote...		Potri.016G132500 [exp]	0	1
AT1G10020			Protein of unknown function (D...		Potri.001G288900 [exp]	1.73	0.7901
AT5G47920			unknown protein		Potri.014G140000 [exp]	2.23	0.6662
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Potri.010G213200 [exp]	2.82	0.7181
					Potri.001G053450 [exp]	3.00	0.7028
AT1G10020			Protein of unknown function (D...		Potri.009G084000 [exp]	6.32	0.6756
					Potri.006G183466 [exp]	13.19	0.6656
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Potri.015G046300 [exp]	13.26	0.6023
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.007G139400 [exp]	14.24	0.6656
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100700 [exp]	16.70	0.6241
AT4G26490			Late embryogenesis abundant (L...		Potri.001G468400 [exp]	16.91	0.5967

Compare expression of checked genes

Potri.016G132500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.