Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1) AT5G58400 332 / 1e-113 Peroxidase superfamily protein (.1) AT5G58390 327 / 5e-112 Peroxidase superfamily protein (.1) AT1G14550 296 / 9e-100 Peroxidase superfamily protein (.1) AT4G36430 293 / 4e-98 Peroxidase superfamily protein (.1) AT3G50990 288 / 4e-96 Peroxidase superfamily protein (.1) AT4G16270 287 / 1e-95 Peroxidase superfamily protein (.1) AT1G14540 286 / 1e-95 Peroxidase superfamily protein (.1) AT5G06720 286 / 2e-95 ATPA2 peroxidase 2 (.1) AT2G18150 284 / 1e-94 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154400 [exp] 412 / 2e-145 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 371 / 3e-129 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 369 / 2e-128 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 344 / 1e-118 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 343 / 2e-118 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 340 / 2e-116 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 335 / 3e-115 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 335 / 3e-115 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 333 / 4e-114 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006534 [exp] 371 / 5e-129 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10000346 [exp] 363 / 8e-125 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10034207 [exp] 359 / 2e-124 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10009937 [exp] 351 / 2e-121 AT5G05340 347 / 6e-120 Peroxidase superfamily protein (.1) Lus10003573 [exp] 342 / 5e-118 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10032786 [exp] 341 / 2e-117 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10008581 [exp] 336 / 1e-115 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10030148 [exp] 335 / 2e-115 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10024209 [exp] 334 / 3e-114 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10025256 [exp] 320 / 7e-109 AT5G05340 290 / 4e-97 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.016G132700.1 pacid=42810187 polypeptide=Potri.016G132701.1.p locus=Potri.016G132700 ID=Potri.016G132700.1.v4.1 annot-version=v4.1 ATGGCTTCTTTTAACTCTTCCTCATCAACCATCACTACCTTCAAATTCCATTTTGGGGCATTTCTGCTTCTTGTTGGTGTTGCTTCTGCTCAATTAGCTT CAAACTTCTATGGAACATCATGCCCCAGTGTCCTTTCTGTCATTAAATCAGCTGTTGACTCAGCAGTGTCAAATGAGGCTCGCATGGGGGCATCCTTGCT CCGTCTTCATTTCCATGATTGCTTTGTTAATGGGTGTGATGCATCAGTGCTTTTGGACGGTGGAGAAAAGACAGCACCAGCAAATACTAATTCTCTGAGA GGTTTCGAAGTTATTGACAGTATTAAAACTCAATTAGAGAGTTCCTGCCCTGGTGTTGTGTCCTGTGCTGACATCTTATCTGTTGCTGCTCGGGACTCTG TTGTTGCTTTGGGTGGTCCTAGTTGGCAAGTTCAATTGGGCAGGAGAGATTCAGCCACAGCAGGAAGTGTTAGCGATGTTAATAACAACGTCCCTTCCCC AGCCTTGAGTGTCAGTGGCCTCATCTCTGCCTTCTCCAACAAAGGTTTCACAGCTAAAGAAATGGTGGCTCTTTCTGGATCTCACACAATAGGGCAAGCA AGATGTACCACATTCCTAACCAGAATCAACAATGAAACCAACATAGATTCCTCGTTCAAAACATCAACACAAGCTCAATGTCAGAATACTAACAATTTTG TTCCTTTGGATGTCACGAGCCCAACATCTTTCGACAGTGCTTACTACAGGAACTTACTGAACCAAAAGGGTCTTTTACACTCTGACCAGCAACTCTTTAG TGGGGGCTCTACAGATGCTCAAGTTAGGGCTTATAGCTCTAATCAGGCTGCTTTCAGGACAGACTTTGCAAATGCAATGATAAAGATGGGAAACCTTAGC CCACTTACTGGCACAAATGGCCAGATCAGGACCAATTGCAGGAAGGCCAATTGA
AA sequence Show only first row Show all	>Potri.016G132700.1 pacid=42810187 polypeptide=Potri.016G132701.1.p locus=Potri.016G132700 ID=Potri.016G132700.1.v4.1 annot-version=v4.1 MASFNSSSSTITTFKFHFGAFLLLVGVASAQLASNFYGTSCPSVLSVIKSAVDSAVSNEARMGASLLRLHFHDCFVNGCDASVLLDGGEKTAPANTNSLR GFEVIDSIKTQLESSCPGVVSCADILSVAARDSVVALGGPSWQVQLGRRDSATAGSVSDVNNNVPSPALSVSGLISAFSNKGFTAKEMVALSGSHTIGQA RCTTFLTRINNETNIDSSFKTSTQAQCQNTNNFVPLDVTSPTSFDSAYYRNLLNQKGLLHSDQQLFSGGSTDAQVRAYSSNQAAFRTDFANAMIKMGNLS PLTGTNGQIRTNCRKAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05340			Peroxidase superfamily protein...		Potri.016G132700 [exp]	0	1
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.008G160000 [exp]	7.54	0.8755
AT1G03220			Eukaryotic aspartyl protease f...		Potri.008G203200 [exp]	9.16	0.8323
AT1G34110			Leucine-rich receptor-like pro...		Potri.005G198000 [exp]	14.07	0.8427
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.010G222100 [exp]	15.62	0.8637
AT3G45070			P-loop containing nucleoside t...		Potri.010G138400 [exp]	17.32	0.8177
AT4G02370			Protein of unknown function, D...		Potri.014G127500 [exp]	22.62	0.8123
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.015G100800 [exp]	24.08	0.8054
AT4G35160			O-methyltransferase family pro...		Potri.013G121900 [exp]	25.98	0.8530
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	35.49	0.7981	Pt-KCS1.1
AT1G48960			Adenine nucleotide alpha hydro...		Potri.012G059100 [exp]	47.49	0.7798

Compare expression of checked genes

Potri.016G132700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.