Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PRX1.7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) AT1G14550 328 / 4e-112 Peroxidase superfamily protein (.1) AT5G58400 326 / 2e-111 Peroxidase superfamily protein (.1) AT1G14540 318 / 3e-108 Peroxidase superfamily protein (.1) AT5G58390 308 / 1e-104 Peroxidase superfamily protein (.1) AT1G44970 296 / 2e-99 Peroxidase superfamily protein (.1) AT4G36430 294 / 9e-99 Peroxidase superfamily protein (.1) AT5G66390 287 / 5e-96 Peroxidase superfamily protein (.1) AT2G18150 284 / 8e-95 Peroxidase superfamily protein (.1) AT2G18140 282 / 5e-94 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107000 [exp] 503 / 0 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 486 / 9e-175 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 366 / 3e-127 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.008G022232 [exp] 357 / 2e-123 AT1G14550 401 / 6e-141 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 356 / 2e-123 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.008G022501 [exp] 355 / 5e-123 AT1G14550 434 / 3e-154 Peroxidase superfamily protein (.1) Potri.008G022248 [exp] 355 / 1e-122 AT1G14540 404 / 3e-142 Peroxidase superfamily protein (.1) Potri.008G022700 [exp] 355 / 1e-122 AT1G14540 404 / 4e-142 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 353 / 4e-122 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025255 [exp] 451 / 1e-160 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10006534 [exp] 360 / 9e-125 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10009936 [exp] 354 / 2e-122 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10008581 [exp] 348 / 2e-120 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10000346 [exp] 347 / 1e-118 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10030145 [exp] 344 / 3e-118 AT5G05340 353 / 2e-121 Peroxidase superfamily protein (.1) Lus10009898 [exp] 343 / 7e-118 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10009902 [exp] 338 / 3e-116 AT1G14550 441 / 8e-157 Peroxidase superfamily protein (.1) Lus10009935 [exp] 337 / 1e-115 AT5G05340 358 / 9e-124 Peroxidase superfamily protein (.1) Lus10024208 [exp] 337 / 2e-115 AT1G14550 442 / 3e-157 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.016G132800.1 pacid=42810575 polypeptide=Potri.016G132800.1.p locus=Potri.016G132800 ID=Potri.016G132800.1.v4.1 annot-version=v4.1 ATGGTTTCTCGTACCATCTTCTGTCTTTCTGCCTTCCTTGTGCTTTTGGTTCTTGCTACTTCTGCTTCTTCTTCAAAAGTACTCTCTCCATATTACTATA ACCATGTGTGTCCCAAAGCTTTAGCAACTATCAAACGAGTTGTGGAGGCTGCAGTTTACAAAGAAAGACGCATGGGTGCTTCTTTGTTGCGTCTACACTT CCATGATTGTTTTGTCAATGGTTGTGATGCATCAATTCTTTTGGATTCAACATCCACCATTGACAGTGAAAAGAATGCGTTGCCTAATATCAATTCTCTT AGAGGATTTGAAGTTATTGACCAAGTTAAGTCGGAGGTGGACAAAATCTGTGGACGTCCAGTGGTCTCATGTGCAGATATCGTAGCTGTTGCAGCCCGGG ACTCCGTCGTTGCGCTAGGAGGGCCAACATGGGCCGTCCAACTAGGAAGGAAGGACTCAACCACAGCTAGCAGAGACAAAGCCAACAATGACCTCCCATC ACCATTCATGGATCTTCCTGCCCTAATCAACAACTTCAAAAGGCAGGGTTTAAATGAGAGAGACCTTGTAGCTCTCTCCGGAGGCCACACTTTAGGGTCA GCACAGTGTTTTACGTTCAGAAACAGAATCCACAATGAAACAAATATCGACCCTAAATTTGTTAAACAGCGCAAACCAACATGTCCACTCGTTGGAGGTG ACTCGAACCTTGCTCCTCTAGACCCAACACCTGCACACTTTGATGTTGCATACTTCAACAGTTTGGTGAAGAAAAGAGGGTTGCTTCGCTCTGATCAAGC CCTCTTCAACGGTGGCTCCACAGATGGATTGGTGAAGGCTTATAGTTCAAATGCTAAGGCTTTTTGGGCTGATTTTGCTAAGTCTATGGTTAAGATGGGG AATATAAACGTTTTGACTGGAAAGCAAGGCCAAGTTCGTTTGAATTGTAGGAAGGTGAACTAA
AA sequence Show only first row Show all	>Potri.016G132800.1 pacid=42810575 polypeptide=Potri.016G132800.1.p locus=Potri.016G132800 ID=Potri.016G132800.1.v4.1 annot-version=v4.1 MVSRTIFCLSAFLVLLVLATSASSSKVLSPYYYNHVCPKALATIKRVVEAAVYKERRMGASLLRLHFHDCFVNGCDASILLDSTSTIDSEKNALPNINSL RGFEVIDQVKSEVDKICGRPVVSCADIVAVAARDSVVALGGPTWAVQLGRKDSTTASRDKANNDLPSPFMDLPALINNFKRQGLNERDLVALSGGHTLGS AQCFTFRNRIHNETNIDPKFVKQRKPTCPLVGGDSNLAPLDPTPAHFDVAYFNSLVKKRGLLRSDQALFNGGSTDGLVKAYSSNAKAFWADFAKSMVKMG NINVLTGKQGQVRLNCRKVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05340			Peroxidase superfamily protein...		Potri.016G132800 [exp]	0	1	Pt-PRX1.7
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.003G122500 [exp]	1.73	0.9871	CYP87.2
AT4G30170			Peroxidase family protein (.1)		Potri.018G089900 [exp]	2.44	0.9802
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Potri.015G090000 [exp]	3.74	0.9758
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	3.87	0.9737
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.003G106900 [exp]	4.79	0.9685	2OGox20
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.016G027800 [exp]	4.89	0.9757
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	4.89	0.9793
AT5G37990			S-adenosyl-L-methionine-depend...		Potri.017G121800 [exp]	4.89	0.9785
					Potri.001G130800 [exp]	5.83	0.9723
					Potri.001G405600 [exp]	6.70	0.9757

Compare expression of checked genes

Potri.016G132800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.