Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40475 50 / 2e-07 ASG8 ALTERED SEED GERMINATION 8, unknown protein AT5G01790 46 / 4e-06 unknown protein AT1G06930 42 / 8e-05 unknown protein AT3G56260 41 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107200 [exp] 141 / 2e-42 AT2G40475 49 / 4e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.013G083101 [exp] 89 / 4e-22 AT2G40475 60 / 3e-11 ALTERED SEED GERMINATION 8, unknown protein Potri.019G127400 [exp] 80 / 2e-18 AT1G06930 / unknown protein Potri.013G156100 [exp] 79 / 6e-18 AT1G06930 / unknown protein Potri.018G091900 [exp] 48 / 9e-07 AT4G25845 54 / 2e-09 unknown protein Potri.006G167300 [exp] 46 / 5e-06 AT4G25845 78 / 2e-18 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009096 [exp] 67 / 9e-14 AT1G06930 47 / 2e-06 unknown protein Lus10025251 [exp] 67 / 9e-14 AT1G06930 47 / 8e-07 unknown protein Lus10012896 [exp] 66 / 6e-13 AT2G40475 52 / 6e-08 ALTERED SEED GERMINATION 8, unknown protein Lus10030550 [exp] 64 / 3e-12 AT5G01790 50 / 2e-07 unknown protein Lus10034209 [exp] 58 / 2e-10 AT1G06930 52 / 8e-09 unknown protein Lus10029060 [exp] 57 / 4e-10 AT5G01790 46 / 2e-06 unknown protein Lus10014158 [exp] 56 / 4e-09 AT1G06930 45 / 8e-06 unknown protein Lus10022751 [exp] 42 / 8e-05 ND 42 / 5e-05 Lus10009929 [exp] 41 / 0.0002 AT1G06930 61 / 1e-11 unknown protein Lus10019869 [exp] 41 / 0.0003 AT4G25850 48 / 4e-07 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G133200.1 pacid=42809007 polypeptide=Potri.016G133200.1.p locus=Potri.016G133200 ID=Potri.016G133200.1.v4.1 annot-version=v4.1 ATGCTTAGGAGTGCTACTTCATCCGTGGACCATCCACAAAAAGCCCTCGAAATGAAGCAAGATGACAAGTTTTTCTCCAGGCTTATGTCCAAAGAGAACT CCATGGCTAATCCTTCTTTTAGAGTGTACTATGGTGGAGTATCTGTTGCTGTCCCGTTTGTGTGGGAGTCTCAGCCTGGTACCCCCAAGTACACATTTTG TGAAAAAACACTCCCTCCTCTAACTCCACCTCCCTCTTACTATACAAATTCTAATAAAAAACCCACCAAGAATCACTCAAGATCCAATCTTTTACGCTTC CTGTTCCCAAGGAACAATCTCAGGAAAACCAATGTGTCCTCTTCAGCAACCAATCTGTCAACATCCCCATCTTCTGCATCATGGTCATCATTGACTTCAT CGAGTAATCTTCGTTCTTTGAGCACTCCAAGAAAGTACCATGAGAGGAGCGGGTTTTCTAGCCGTGGATCATCATTTGATTCAAGGGTTTTTGATGATTT TGAAGAATCACACAATATGGGATCATCACCTTCTTCAAAATTGTGCTTTGGCATCAGTGGGAGAAGTACTAGTACTGGTGGGCTTCGAGGATGCTATGGT GTGTGGTAA
AA sequence Show only first row Show all	>Potri.016G133200.1 pacid=42809007 polypeptide=Potri.016G133200.1.p locus=Potri.016G133200 ID=Potri.016G133200.1.v4.1 annot-version=v4.1 MLRSATSSVDHPQKALEMKQDDKFFSRLMSKENSMANPSFRVYYGGVSVAVPFVWESQPGTPKYTFCEKTLPPLTPPPSYYTNSNKKPTKNHSRSNLLRF LFPRNNLRKTNVSSSATNLSTSPSSASWSSLTSSSNLRSLSTPRKYHERSGFSSRGSSFDSRVFDDFEESHNMGSSPSSKLCFGISGRSTSTGGLRGCYG VW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.016G133200 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Potri.013G022800 [exp]	3.46	0.8460
AT5G47740			Adenine nucleotide alpha hydro...		Potri.006G003900 [exp]	5.29	0.8400
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128600 [exp]	7.41	0.8370
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G099400 [exp]	16.91	0.8145
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G024600 [exp]	18.13	0.8254
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Potri.003G104000 [exp]	18.49	0.8221
AT3G49950	GRAS		GRAS family transcription fact...		Potri.017G041500 [exp]	18.97	0.8611
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.008G040100 [exp]	25.09	0.8319
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.006G107700 [exp]	28.56	0.8126
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101500 [exp]	40.39	0.7792

Compare expression of checked genes

Potri.016G133200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.