Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38370 258 / 9e-79 Plant protein of unknown function (DUF827) (.1) AT3G51720 172 / 7e-48 Plant protein of unknown function (DUF827) (.1) AT2G40480 129 / 8e-32 Plant protein of unknown function (DUF827) (.1) AT2G26570 125 / 1e-29 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) AT3G56270 102 / 4e-23 Plant protein of unknown function (DUF827) (.1) AT5G42880 87 / 1e-17 Plant protein of unknown function (DUF827) (.1) AT4G33390 86 / 3e-17 Plant protein of unknown function (DUF827) (.1) AT1G45545 58 / 2e-08 Plant protein of unknown function (DUF827) (.1) AT5G55860 52 / 8e-07 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049201 [exp] 317 / 2e-100 AT2G40480 358 / 3e-117 Plant protein of unknown function (DUF827) (.1) Potri.002G126700 [exp] 115 / 2e-26 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.014G029800 [exp] 113 / 8e-26 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 75 / 7e-14 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.004G095800 [exp] 49 / 8e-06 AT1G66840 314 / 1e-98 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.017G118900 [exp] 47 / 3e-05 AT1G66840 305 / 5e-95 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025249 [exp] 584 / 0 AT2G38370 327 / 5e-105 Plant protein of unknown function (DUF827) (.1) Lus10009099 [exp] 559 / 0 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10029055 [exp] 127 / 1e-31 AT2G40480 226 / 6e-69 Plant protein of unknown function (DUF827) (.1) Lus10034211 [exp] 124 / 5e-30 AT2G40480 385 / 1e-128 Plant protein of unknown function (DUF827) (.1) Lus10037354 [exp] 105 / 3e-23 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10035778 [exp] 105 / 4e-23 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10029056 [exp] 84 / 4e-19 AT2G40480 124 / 1e-34 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 58 / 2e-08 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 54 / 4e-07 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [poplar] [flax] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Potri.016G133300.1 pacid=42809634 polypeptide=Potri.016G133300.1.p locus=Potri.016G133300 ID=Potri.016G133300.1.v4.1 annot-version=v4.1 ATGGAGACCGAAATGAGCGAATCGGGTTCGGGCTCGAGAATTCTGGGCCAAGAAAAATGGTCGGGTTCTGGGAGTATGAAGGCGGAGATTGATACATCAG CTCCGTTTGAGTCAGTTAAAGAAGCAGTGAGTCGATTTGGTGGAATCGGGTACTGGAAACCCTCTCAACAAAAACCAGAGGACATGGAAAATATTGACAT TGCAAAGGTGGAAGAACAAGCAGTGCTGCTGGAGAAAGACCTGTTTGTGAAAGAAAGGGAAACACTGGATATTTTAAAAGAACTAGAAACTACAAAAGGG ATTGTCGAAGAGCTTAAGTTAAAGCTACAGAAACAAGCAGCAGAAGTTAATGCGACCCTGGAGTCAAGTGCAGATGCTAGAAATGAGACTTCTAATTTTG ATGAAGAAGAGAAGGATAACCTTGAAAATCCCAAGGGGGAAGAGCTTCAGTTAAAGCTACAGCAACAAGCAGCTGAAGTTAAGGCGGCCCTGGAGTTAAG TGCAGATGCTAGAAATGAGACTTTTAATTTTAATGACGAAAAGAAGGATAACCTTGAGGATGCCAATCATCAGAATTTGATGGGAGGTTTGAGCCCATTG CCCTCTTCAGCCCCTGGCTTAATTTTATTGGAACTCAAACAGGCCAAGTTGAACCTTTCTAGGACTACTAATGATCTTGCAGACACTCGAACTTCTGTTG AGTTACTTAACAAGAAATTAGAGAAGGAAAGAATTTCACTTGAAAAGACTCGTGAGAGGTTGACCACGAATTCCTCTAAGATATCATCTCTTGAGGAAGA GCTGAACCAGACGAAAGAAAAGCTTCAACGGGCAAAAGATGCTGACATGAATGGTGGTTCTGATAATCCTGTGGATATTTCAAGGGAGCTCCAGCGACTG AGTTCTGAAGCAGAGCAGTTCAAGAAAATGGGCGATGCAGCGAAATCTGAAGTTTTGAGAACATTATCTGAGATTGAACAAACAAAAGGTAGGATACAAA CAGCAGAGATCAGGTTGATTGCTGCAAGAAAAATGAAGGAAGCAGCTAGAGCAGTGGAAGCTGTTGCTCTTGCAGAGATCAAGGCTTTGTCAAGCCATGA GAATTCATCTGCGAAGTCCACACAAAAACCTGAAGGAGTAACTCTTACATTTGAAGAGTACTCGTCGCTAACCTGCAAAGCCAGAGAAGCTGAGGAACTT TCCAAGACTAAGGTAGTAGATGCCATGCTTCAAGTTGATGAAGCAAATGTTTCAAAGATGGAAGTCTTGAAGAAAGTGGAGGAAGCTACAGAAGAAATCA AAACCAGCAAAAAGGCCTTGGAAGAAGCGCTAAACAGAGTTGAAGCTGCAAATAAGGGAAAGCTGGCGGTTGAAGAGGCTTTGCGCAGGTGGAGATCTGA GCATGGGCAGAAAAGGCGTTCCATACACAACTCTGCTAAGTTTAAAAACCCCCACCCATCTCACCATAGGAGGGACTCTCGCTTGCTTGATGTGAATGGG CTGAACCTAGTAAGCGATGGCTCGACACCTGTTTTGAAGCCAACCCTCTCAATAGGGCAAATACTTAGCAGGAAACTACTTCTGCCTGAAGAGTTTGAGA CAGGGACAATGGCAGAAAAGGGTACTGTGAAGCGAAAGGTGTCGTTGGGTCAAATGCTTGGTAAACAAAATGTTGATGTACTCCCAAGCTGGAAGGTTGA TAAGGAGAACTGTCAGAAGCAGTTTTCTGGAAAGAGGAAGAAGTTTGGATTTGCTCGGTTCTCGCTTCTATTGACAAAGCAGAGTAAGAAAAAGAAGAAG CCAACTCCAAACTTGAGGTGA
AA sequence Show only first row Show all	>Potri.016G133300.1 pacid=42809634 polypeptide=Potri.016G133300.1.p locus=Potri.016G133300 ID=Potri.016G133300.1.v4.1 annot-version=v4.1 METEMSESGSGSRILGQEKWSGSGSMKAEIDTSAPFESVKEAVSRFGGIGYWKPSQQKPEDMENIDIAKVEEQAVLLEKDLFVKERETLDILKELETTKG IVEELKLKLQKQAAEVNATLESSADARNETSNFDEEEKDNLENPKGEELQLKLQQQAAEVKAALELSADARNETFNFNDEKKDNLEDANHQNLMGGLSPL PSSAPGLILLELKQAKLNLSRTTNDLADTRTSVELLNKKLEKERISLEKTRERLTTNSSKISSLEEELNQTKEKLQRAKDADMNGGSDNPVDISRELQRL SSEAEQFKKMGDAAKSEVLRTLSEIEQTKGRIQTAEIRLIAARKMKEAARAVEAVALAEIKALSSHENSSAKSTQKPEGVTLTFEEYSSLTCKAREAEEL SKTKVVDAMLQVDEANVSKMEVLKKVEEATEEIKTSKKALEEALNRVEAANKGKLAVEEALRRWRSEHGQKRRSIHNSAKFKNPHPSHHRRDSRLLDVNG LNLVSDGSTPVLKPTLSIGQILSRKLLLPEEFETGTMAEKGTVKRKVSLGQMLGKQNVDVLPSWKVDKENCQKQFSGKRKKFGFARFSLLLTKQSKKKKK PTPNLR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38370			Plant protein of unknown funct...		Potri.016G133300 [exp]	0	1
AT2G30890			Cytochrome b561/ferric reducta...		Potri.002G057900 [exp]	2.82	0.9312
AT2G24230			Leucine-rich repeat protein ki...		Potri.018G107400 [exp]	4.47	0.9121
AT2G47500			P-loop nucleoside triphosphate...		Potri.002G201000 [exp]	4.89	0.9263
AT5G58000			Reticulon family protein (.1)		Potri.018G108200 [exp]	8.36	0.9103
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.005G001600 [exp]	13.26	0.9023	MYB61.2
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.001G126100 [exp]	14.07	0.9090
AT2G45300			RNA 3'-terminal phosphate cycl...		Potri.014G068300 [exp]	14.07	0.9070
AT2G23360			Plant protein of unknown funct...		Potri.005G140300 [exp]	16.43	0.9004
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	16.70	0.9219
AT1G67910			unknown protein		Potri.010G046700 [exp]	17.49	0.8943

Compare expression of checked genes

Potri.016G133300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.