Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51730 179 / 3e-56 saposin B domain-containing protein (.1) AT5G01800 150 / 5e-45 saposin B domain-containing protein (.1) AT1G34460 42 / 0.0002 CYCB1;5, CYC3, CYCB1;4 CYCLIN 3, CYCLIN B1;5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107300 [exp] 309 / 4e-107 AT3G51730 182 / 9e-58 saposin B domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025248 [exp] 196 / 2e-62 AT3G51730 209 / 3e-68 saposin B domain-containing protein (.1) Lus10009099 [exp] 207 / 8e-62 AT2G38370 340 / 1e-107 Plant protein of unknown function (DUF827) (.1) Lus10014162 [exp] 178 / 8e-55 AT5G01800 176 / 4e-54 saposin B domain-containing protein (.1) Lus10022750 [exp] 177 / 3e-54 AT5G01800 184 / 2e-57 saposin B domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03489 [poplar] [flax] SapB_2 Saposin-like type B, region 2 PF05184 [poplar] [flax] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Potri.016G133400.1 pacid=42810308 polypeptide=Potri.016G133400.1.p locus=Potri.016G133400 ID=Potri.016G133400.1.v4.1 annot-version=v4.1 ATGGACTTGAGGATCGGGTTGTTGTTTCTTCTTGCTCTGGGTGCTGCTGGCTCCATTGCGGCTAGACAAATGGCAGCCACTGAGATTTTTAGTACAACCG CAGAAACCTATGAAATATCAGTTGAAATAATGGAAAACCAGGAGCAAGAAAATGAAATTCAAACAACAAACAATGTTACCAGGAAAGATGAGGTGTGCAC ATTGTGTGAGGAGTTTGCTTCGCAGGCACTTGATTACCTGGCTGAAAACAAAACACAGACTGAAATTCTTGAAAAGCTTCACAGAAGCTGTTCACGGTTG ACTACTTTCGAGCAAGAGTGCATCACTTTGGTGGACTACTATTCTTCTATTTTCTTCTCATACGCTTCCTCAGTGCAATCTGAAGATTTCTGTCGCAAAT TCAATCTCTGTCAAGAAATGAAAACTTTCTCTGCAAAACGCAATGATGATAGCTGTAGCATTTGCCAACGTGCTGTTTCAGAAGTACTAGTCAAGTTGAA AGATCCTGACACACAGCTGGAAATAATTGAGTTGCTTTTGAAGGCATGTAACTCCATGGAGAAATATGCTCATAAGTGCAAAAGGATGGTTTTTGAGTAT GGTCCCGTGATCCTTGCCAATGCAGAGCAATTTCTTGAAACAACAGATCTATGCACAGTGTTACATGCCTGCAAAGAGTCTGAAGACAGCATGGAGCAGG CTTCGGCGGTGCTAAAGGCTGATTCATAA
AA sequence Show only first row Show all	>Potri.016G133400.1 pacid=42810308 polypeptide=Potri.016G133400.1.p locus=Potri.016G133400 ID=Potri.016G133400.1.v4.1 annot-version=v4.1 MDLRIGLLFLLALGAAGSIAARQMAATEIFSTTAETYEISVEIMENQEQENEIQTTNNVTRKDEVCTLCEEFASQALDYLAENKTQTEILEKLHRSCSRL TTFEQECITLVDYYSSIFFSYASSVQSEDFCRKFNLCQEMKTFSAKRNDDSCSICQRAVSEVLVKLKDPDTQLEIIELLLKACNSMEKYAHKCKRMVFEY GPVILANAEQFLETTDLCTVLHACKESEDSMEQASAVLKADS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51730			saposin B domain-containing pr...		Potri.016G133400 [exp]	0	1
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.004G062500 [exp]	1.41	0.8681
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.006G135800 [exp]	6.00	0.8375
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Potri.003G097300 [exp]	7.74	0.7938	Pt-XTR4.1
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Potri.001G182000 [exp]	8.36	0.8503
AT4G38800		ATMTN1, ATMTAN1	ARABIDOPSIS METHYLTHIOADENOSIN...		Potri.009G128700 [exp]	9.32	0.8133
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G071900 [exp]	13.56	0.7994
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G102800 [exp]	15.68	0.8561	Pt-FIP1.3
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Potri.008G039100 [exp]	16.97	0.8058
AT5G43060			Granulin repeat cysteine prote...		Potri.014G024100 [exp]	16.97	0.8657	RD21.1
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Potri.009G117500 [exp]	18.57	0.8311	RD2.1

Compare expression of checked genes

Potri.016G133400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.