Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58380 593 / 0 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G07070 559 / 0 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G45820 553 / 0 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G01810 536 / 0 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G25110 481 / 2e-167 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT4G18700 478 / 3e-166 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G10930 474 / 2e-165 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT4G30960 466 / 2e-162 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45810 462 / 3e-160 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 461 / 4e-159 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G127500 [exp] 625 / 0 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 620 / 0 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 618 / 0 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 552 / 0 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 514 / 0 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 489 / 1e-171 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.006G263500 [exp] 479 / 2e-167 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.011G067600 [exp] 468 / 1e-161 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.006G062800 [exp] 464 / 2e-161 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022749 [exp] 634 / 0 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 617 / 0 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 607 / 0 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10008582 [exp] 530 / 0 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10021852 [exp] 503 / 7e-177 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10007283 [exp] 503 / 2e-176 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10036280 [exp] 499 / 2e-175 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10029054 [exp] 499 / 2e-175 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10034212 [exp] 492 / 8e-173 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10015275 [exp] 472 / 2e-163 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.016G133500.2 pacid=42809457 polypeptide=Potri.016G133500.2.p locus=Potri.016G133500 ID=Potri.016G133500.2.v4.1 annot-version=v4.1 ATGGAGAACAAAGGGAATGTGTTGATGCAAAAATATGAGATAGGGAGATTGTTGGGGCAAGGAACTTTTGCCAAGGTCCACCATGCAAGGGATCTCAAAA CTGGCATGAGTGTGGCAATCAAGATGATCGACAAGGAGAAGGTATTCAAGGTTGGAATGATGGACCAGATTAAGCGAGAAATTTCTGTCATGAGACTGAT TAGGCATCCCAATGTGGTGGAACTTTATGAGGTCATGGCCACCAAAACTAAGATTTACTTTGTTATGGAATACGTTAAAGGTGGTGAGTTGTTCAACAAG GTTGCCAAGGGAAAGCTCAAAGAGGATGTTGCCAGGAAATATTTTCAACAGCTGATCAGTGCAGTTGATTACTGTCACAGTAGAGGAGTCTCTCATCGTG ATCTGAAACCAGAAAACCTGCTGTTGGATGAGAATGAGAATCTAAAGGTTTCTGATTTTGGATTAAGTGCACTTGCTGAATCGAAGCGGCAAGATGGTTT ACTACATACAACCTGTGGAACCCCTGCATATGTTGCTCCAGAAGTGATTAACAGAAAAGGCTACGATGGAGCTAAAGCTGATATTTGGTCCTGTGGAGTA ATCTTATATGTTCTACTGGCCGGCTATCTCCCATTCCGTGATCCAAATCTGATGGAGATGTATAGGAAGATTGCGAAGGGAGAATTTAAATGCCCCAATT GGTTTGCACCCGAAGTTCGCAAGCTTCTGTCAAAGATACTGGATCCGAACCCAAACACAAGGATATCAATGGCCAAAATAATGGAAAATTCTTGGGTTCG GAAGGATTTGCAATCCAGACCCTGTGTTCTTGAAGCCGAAGTGAAAGAACCAGCTCCTTTGGACTCTGAGGCTGTTTTTGGCATAAATGAGATTAGCTGC GCTGCTGTGGAACCAAAGCAAGAAGTGGCGAAGCCTTGCAACTTAAATGCTTTCGATATTATCTCCTTTTCTGCGGGCTTTGACCTGTCTGGCTTATTTG AGGAGAAAGAGCAGAAGAAAGAAGTGAGGTTTACATCAAACAAGCCTGCCTCCACCATCATCTCTAAGCTCGAAGACATCGCCAAGCGTTTGAGGCTGAA AATAAAGAAAAACGATGGAGGTTTACTGAAAATAGAAGGTTCAAAGGAAGGCCGGAAAGGAGTCATGGGCATCGATGCAGAAATTTTTGAGATCACTCCT TTTTTCCATTTGGTGGAGATGAAAAAGTCCAGTGGAGATACCGTGGAGTATCAGAAGGTAGTGAAACAAGACATTCGACCTGCACTCAAGGACATTGTTT GGAGCTGGCAAGGAGAACAGCAAAGGGAACAACTACAACTACAAGAACAGCAGGAGCTACAGCCTTCTCATGCATCCACAACGCAGGTTGTCTCAACTCA GAATTCATCATGA
AA sequence Show only first row Show all	>Potri.016G133500.2 pacid=42809457 polypeptide=Potri.016G133500.2.p locus=Potri.016G133500 ID=Potri.016G133500.2.v4.1 annot-version=v4.1 MENKGNVLMQKYEIGRLLGQGTFAKVHHARDLKTGMSVAIKMIDKEKVFKVGMMDQIKREISVMRLIRHPNVVELYEVMATKTKIYFVMEYVKGGELFNK VAKGKLKEDVARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGV ILYVLLAGYLPFRDPNLMEMYRKIAKGEFKCPNWFAPEVRKLLSKILDPNPNTRISMAKIMENSWVRKDLQSRPCVLEAEVKEPAPLDSEAVFGINEISC AAVEPKQEVAKPCNLNAFDIISFSAGFDLSGLFEEKEQKKEVRFTSNKPASTIISKLEDIAKRLRLKIKKNDGGLLKIEGSKEGRKGVMGIDAEIFEITP FFHLVEMKKSSGDTVEYQKVVKQDIRPALKDIVWSWQGEQQREQLQLQEQQELQPSHASTTQVVSTQNSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.016G133500 [exp]	0	1
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G103100 [exp]	2.00	0.8543
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.003G067600 [exp]	4.24	0.7988	Pt-LOX3.2
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.018G092100 [exp]	6.92	0.7923	PSC450.1
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021400 [exp]	12.24	0.8155
AT4G26470			Calcium-binding EF-hand family...		Potri.001G471100 [exp]	16.12	0.7925
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.005G213500 [exp]	16.30	0.7750	Pt-SULTR3.5
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Potri.010G035900 [exp]	16.91	0.8258
AT5G57490		VDAC4, ATVDAC4	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.018G093900 [exp]	29.69	0.7518
AT5G01820		PKS24, CIPK14, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.016G133900 [exp]	34.95	0.7915	Pt-CIPK14.1
AT4G39640		GGT1	gamma-glutamyl transpeptidase ...		Potri.005G082800 [exp]	35.49	0.7549

Compare expression of checked genes

Potri.016G133500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.