Plant FIBer expression Database

Potri.016G133700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51650 705 / 0 unknown protein
AT3G51640 684 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G107500
[exp]
1339 / 0 AT3G51650 671 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025247
[exp]
860 / 0 AT3G51650 723 / 0.0 unknown protein
Lus10009100
[exp]
850 / 0 AT3G51650 721 / 0.0 unknown protein
Lus10025250
[exp]
816 / 0 AT3G51650 686 / 0.0 unknown protein
Lus10009097
[exp]
407 / 1e-131 AT3G51650 360 / 2e-114 unknown protein
Lus10009098
[exp]
310 / 5e-100 AT3G51650 294 / 3e-95 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G133700.1 pacid=42810249 polypeptide=Potri.016G133700.1.p locus=Potri.016G133700 ID=Potri.016G133700.1.v4.1 annot-version=v4.1
ATGTGTATACTGTGTGTGATTCAAAAGTGGTCGCGCCGGGTTGCAACGATGCTACCTTGGTTAGTTATTCCTTTGATAGGATTATGGGCACTGTCGCAGT
TATTACCTCCGGCATTTCGATTTGAGATAACGTCGCCAAGATTGGCGTGTGTATCTGTGCTATTGGTTACTTTGTTTTGGTACGAGGTGCTGATGCCACA
GCTGTCAGCGTGGAGGGTGCGTAGAAATGCATGGTTGAGGGAGAGGAAGAGGTCTGAAGCAATTGAGTTGCAGAAGCTTAGGAAGACAGCGACAAGGAAG
TGTAGGAATTGTTTGACACCATATAAGGATCAGAATCCTGGTGGGGGGAAGTTTATGTGTTCGTATTGTGGGCATATTTCAAAAAGGCCTGTTTTGGATT
TGCCTGTACTGCCAGGGATTGGGATTTCGAATCCAGGGATTATTAAGGATTTGGTGGGGAAAAGTGGGAAGATATTGAATGGAAAGGCATGGAGTGATAA
TGGATGGACGTGTAGTCAGGAGTGGTTAGATAATGGTGGTTGGGCTTGTGGGTCTATTGCTGGGAAGTCTAGTTATTGGAGGAAGAATGGGAATGGTATT
TTTGGAGGAGATGAGAATTGTTTGGCTGAGAAGTCGTATTCCAGGGTTGTGATTTTTTCTTGCAAGCTGTTGACGTCTTTTTTCTTGAGCATTAGGTGGC
TCTGGAGGAAGGTTTTTAGGATTAGTTCCTCTGAGGATGGTTCTTCTGATGCAGGGCATAGGGCAATGTTGGCTAAGAGGCGTGAGGATGGGGAAAATTA
TCATGAGAGTAGAGGGGATAAAGCACGCAGGAAAGCTGAAGAGAAGAGACAGGCTAGGTTAGAGAAGGAGCTCTTAGAGGAGGAAGAGAAAAAGCAAAGG
GAGGACGTTGCAAGATTGGTGGAGGAACGTAGGAGGCTGAGGGATGAGATTATGGAGGCTGAAAGAGATCGAAGTCAAACGTCACCACTGTCCAGGGAGA
AAAATAGTAGGAAGGATGCAGAAAAGAAACGTCAGGAAAGAAGGAAAGAGAAAGACAAGGGATCTAGTAAGAGCAACTCTGATGCTGAAGAGTTGGAAAA
GAGAGCAGGTAAGGAAAGTGATCGAAGGCGGGATGTTGAAAAGAAGAGTGAATCTGAGCGCCGTGAACATCATAAATCTGGGATGGAAAGTGTGAAAGGT
CAGAACATTGAATCAGGACATGGTATAAAGAATACACCTGGAAGCAATTTCAATCGGGGCAATGCTGGATCTAGGTATTTTGATCGAATGAAGGGTACGT
TTTTGTCTTCTTCTAGAGCTTTTAGTGGAGGTGGTTTCTTTGGAAAGACTGCCTATACTCCTGCTACTGTTACTAAAGAAAATAAGCCCAACAGTTCTAT
AGATCCTGTTCATGCTTCTGCTTATAGGAGAGATATACATCCACCTGATCGTCTTTCTGGGAAAGCAAGTCTAAATGGAGATGACAAGAACATTTATCAC
CCTGTGCTCTCTGAAACACAACCAAGGATGGCTCCTAAGAAAACATGGCAACAATTATTTACACTCTCATCACCTGCTCATCCATCCTCAAATTCAAATG
TCATCTGTAGACCAATTTCCAAACAAGCAGAATGTCAGGCACAACAGTTTCCTGCACAATCATCACCAATGCAATGTTTTGATAATCCAATCAATTTTGG
GCTGCCGTCACCTTTTCCGGTCTCTGCATTTCAAAATGTATCCAGTAGCACTTCTTTAGGTTTCTCACCTCCTATTGAACCTAATTTTCCCCGTGGTATG
GAAGGGCCCTGTGATTTTATACCCGAAGAACCAGAGCTTTTTGAAGATCCATGTTATATTCCCGATCCAATATCATTGCTGGGGCCTGTTTCAGAGTCGC
TTGATAATTTTCAGTTAGACCTCGGAAATGGTTTTGCACCAGACATGGGACCGGGATTGGAAAGACTTTATGCTATGAAGAACGTGTCTGCATCTCCTGA
AGTGACCAAGCCATCTCCAATCGAGTCCCCGCTGTCACGACTACGAACTGCTGATGAAAAGAATAATGGTTCTAATTGGTTCCCAACTACTCCTATATCC
CAAGATTTTAACACTCTACCTATGAATGATATGCATGTGAATGAGAAGGGAACATGGCAAATGTGGAACAGCTCTCCTCTTGGTCAGGATGGTTTAGGTT
TAGTAGGTGGCCCTGGAAGCTGGCTTTTACCCCCGGAACAGAACAGATCAACCAAGGAAGATATTATACTGCCTCCATCTCAGAAAACTATGGCATCACT
CTTTACAAAAGATGACCAAATCCTACCTGGTACTTATTCTCCTCGGAAGACTTTTCTAGGCAATGGCCAGAGTGGGGTATTCAGTCCAGTCATTGGTTCA
ATTGAAAATGAACCATGGTTACAGAATACCTTTTTCCCACCATTATCAGGCAGCAATAGCCATTTCTCTCTGAAATCTCCGGAGGAAAGTACTCAGAATG
AAATGATCTATCAGAGTCCTACTGGAGCTGCAACCAACAATGCTTTTGGGCCGTCGCCAGGGCATAGTTGTTCCAAGAATGAATGGGGCGGGGAAGGTTC
AGGAGAAGGTTTTGGGAATTCATCTGTCACAAGACCCAATTTTGGTGGTTTGTTCCCCACCTCAGATGTACAGTGGTCATTTGATTAA
AA sequence
>Potri.016G133700.1 pacid=42810249 polypeptide=Potri.016G133700.1.p locus=Potri.016G133700 ID=Potri.016G133700.1.v4.1 annot-version=v4.1
MCILCVIQKWSRRVATMLPWLVIPLIGLWALSQLLPPAFRFEITSPRLACVSVLLVTLFWYEVLMPQLSAWRVRRNAWLRERKRSEAIELQKLRKTATRK
CRNCLTPYKDQNPGGGKFMCSYCGHISKRPVLDLPVLPGIGISNPGIIKDLVGKSGKILNGKAWSDNGWTCSQEWLDNGGWACGSIAGKSSYWRKNGNGI
FGGDENCLAEKSYSRVVIFSCKLLTSFFLSIRWLWRKVFRISSSEDGSSDAGHRAMLAKRREDGENYHESRGDKARRKAEEKRQARLEKELLEEEEKKQR
EDVARLVEERRRLRDEIMEAERDRSQTSPLSREKNSRKDAEKKRQERRKEKDKGSSKSNSDAEELEKRAGKESDRRRDVEKKSESERREHHKSGMESVKG
QNIESGHGIKNTPGSNFNRGNAGSRYFDRMKGTFLSSSRAFSGGGFFGKTAYTPATVTKENKPNSSIDPVHASAYRRDIHPPDRLSGKASLNGDDKNIYH
PVLSETQPRMAPKKTWQQLFTLSSPAHPSSNSNVICRPISKQAECQAQQFPAQSSPMQCFDNPINFGLPSPFPVSAFQNVSSSTSLGFSPPIEPNFPRGM
EGPCDFIPEEPELFEDPCYIPDPISLLGPVSESLDNFQLDLGNGFAPDMGPGLERLYAMKNVSASPEVTKPSPIESPLSRLRTADEKNNGSNWFPTTPIS
QDFNTLPMNDMHVNEKGTWQMWNSSPLGQDGLGLVGGPGSWLLPPEQNRSTKEDIILPPSQKTMASLFTKDDQILPGTYSPRKTFLGNGQSGVFSPVIGS
IENEPWLQNTFFPPLSGSNSHFSLKSPEESTQNEMIYQSPTGAATNNAFGPSPGHSCSKNEWGGEGSGEGFGNSSVTRPNFGGLFPTSDVQWSFD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G51650 unknown protein Potri.016G133700
[exp]
0 1
AT1G33520 MOS2 modifier of snc1, 2, D111/G-pa... Potri.003G104200
[exp]
1.00 0.9125
AT3G24490 Trihelix Alcohol dehydrogenase transcri... Potri.018G075500
[exp]
4.89 0.8600
AT1G80930 MIF4G domain-containing protei... Potri.016G121100
[exp]
5.74 0.8896
AT1G55460 C2H2ZnF DNA/RNA-binding protein Kin17,... Potri.008G055300
[exp]
6.00 0.8671
AT3G51650 unknown protein Potri.006G107500
[exp]
6.78 0.8922
AT5G19900 PRLI-interacting factor, putat... Potri.003G214300
[exp]
7.07 0.8765
AT3G47120 C3HZnF RNA recognition motif (RRM)-co... Potri.009G044900
[exp]
7.74 0.8418
AT2G16485 nucleic acid binding;zinc ion ... Potri.004G161700
[exp]
8.94 0.8871
AT2G25320 TRAF-like family protein (.1) Potri.006G256400
[exp]
10.58 0.8171
AT4G32620 Enhancer of polycomb-like tran... Potri.006G246200
[exp]
11.66 0.8387

Potri.016G133700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.