Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01830 702 / 0 ARM repeat superfamily protein (.1) AT1G29340 362 / 3e-115 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT1G60190 253 / 3e-74 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT3G54850 239 / 7e-70 ATPUB14 plant U-box 14 (.1) AT3G46510 232 / 7e-67 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G42340 222 / 3e-63 PUB15 Plant U-Box 15 (.1) AT1G23030 218 / 6e-62 PUB11 ARM repeat superfamily protein (.1) AT1G71020 213 / 3e-61 ARM repeat superfamily protein (.1.2) AT1G10560 204 / 1e-56 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1) AT2G28830 188 / 4e-50 AtPUB12 PLANT U-BOX 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107600 [exp] 1056 / 0 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.011G071400 [exp] 390 / 4e-126 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.004G061800 [exp] 374 / 8e-120 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.010G185900 [exp] 338 / 2e-106 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G071600 [exp] 336 / 1e-105 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.012G078900 [exp] 303 / 3e-93 AT1G60190 513 / 3e-174 plant U-box 19, ARM repeat superfamily protein (.1) Potri.015G074200 [exp] 295 / 3e-90 AT1G60190 501 / 2e-169 plant U-box 19, ARM repeat superfamily protein (.1) Potri.008G035700 [exp] 250 / 8e-74 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 234 / 8e-68 AT3G54850 806 / 0.0 plant U-box 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006090 [exp] 911 / 0 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10025244 [exp] 909 / 0 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10007317 [exp] 394 / 3e-127 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10007511 [exp] 372 / 3e-119 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 355 / 3e-113 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10029163 [exp] 288 / 2e-87 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10013001 [exp] 267 / 2e-79 AT1G60190 562 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10030628 [exp] 259 / 1e-76 AT1G60190 553 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10037970 [exp] 233 / 1e-67 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016565 [exp] 230 / 6e-66 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.016G134000.1 pacid=42810139 polypeptide=Potri.016G134000.1.p locus=Potri.016G134000 ID=Potri.016G134000.1.v4.1 annot-version=v4.1 ATGGCAATAATTCCTCCTCAAGTTTTCCCGCCAAGAAAACGGAGGCCATCAGCCGGAGCATTTATTCCACCAAAATTTTCTGACCAGAGGCTTCTCCAAT CTCTCTTTCTACTCTCCCAAGAAATATCTTCTCTCAAACCTCTTCCGTTTCTTCTGAAACGTAACTCTTTGTCCATCATACGTAAAGCGAAGATCCTCGC AATCTTATTCGAGGAACTTTTGAAAAAACCAATTCTAGTTTTATCTCCAACTCTCTTATGCTTCGAAGAAATGTACTTAGTTCTTCAAAGAATCAAGACC TTGCTTGAAGACTGCGTGAATGGAAGCAAGATGTGGCTATTGATGCAAAGCGATTCGGTTGCTAATAATTTCCATGAGCTGACGGTAGAATTAGCAACAC TTTTGGATATTTTTTCTGTCAAGGAAGTCGAGGTTAGCGAAGACGTTGAAGAATTGTTTTTGCTGTTAAGGAAACAATGCTCCCAGGCAAAAGTCTTTGT CGATAAAAGAGATTCCAGTTTGCGGCTCGACGTGTTAACAATGCTTGATCGGATTCAGAAGGAGATTGTCCCTGATAACTCAAAGCTGGCAGAGATTTTT GATTTCCTGGGGTTACCCAATTCTTTATCTTGCAAAGAAGAAATTGAGAATCTTGAAGATGAAGTTCAAAACCAAAAAGATGAGAAAGCGAAGTCCGACA TGATTGCTTTGATAGGACTCGTTCGGTACGCGAAATGCGTGCTGTTCGAGCCATTGACACCAGGGTCTGATAGCAAGACGAAAAAACTAGCATCGGATGC GAACATCCCGGCCGATTTCCGGTGTCCGATAAGCCTGGATTTAATGCGGGACCCAGTTGTGATGGCCACAGGTCAGACGTACGATCGAGAGAGTATTGCT CTCTGGATTGAATCAGGGCACAACACGTGTCCGAAGACAGGTCAGGCCCTGGTCCACACCAGCTTGATACCCAACCAAGCTTTGAAGAATTTGATAGCCA TGTGGTGCCGAGAGCTGAAAATACCGTTTGAAACGGCGGGAGATAATAACAGAACTAACGGCGTTATAAAAAACAAGGCAGCGCTTGAGGCTACTAAGAT GACGGCGTCGTTTTTGGTGAACAAAATGTCGGCCTCGCAGTCAATGGAAGCGGTTAACGGAGTTATTTATGAGCTTCGTACACTTGCAAAGAGTAATTCG GATTCCCGAGCCTGCATCGCTGAGGCTGGGGCCATCCCAGTGCTCGCGAGATATTTAGGTTCGGATGTAGGTGTGGGGTCTCTGAACTTACAAGTTAACG CCGTTACAGCTATGTTAAATCTTTCCATTCTTGAAGCGAACAAAACAAAGATCATGGAAAACGGCAAGGCTTTGAACGGCGTTATCGAGGTGTTACGCAC GGGTGCCACGTGGGAGGCGAAGGGGAATGCAGCTGCAACTATATTCAGCCTATCTTGTGTGCACTCCCATAGGAAACTGCTTGGGAGGAAGACACGTGTC ATTAAGGGGTTGATGGATTTAGCCAAAAGCGGGCCCCCGGGTCCCAAGAGGGATGCATTGGTGGCAATTTTGAATTTGGCGGGGGATAGAGAGGCAGCTC GGAGGTTAGTTGAGGAAGGAGTGGTTGATGTGGTTAAAGAAATGATCAATGTTCTGCCGGTAGAAGCCGCGGCGATACTCGAAATGGTGGTAAAGAGAGG AGGGATAATGGCGGTTGCAGCCGCGCATAACACGATAAAGAAGTTGGGCACATTGATGAGGGAAGGATCGGAGACAGCTCGCGAAAGCGCGGTGGCAACA CTCGTCACCATCTGTCGAAAAGGGGGAGCAGAGATGGTGGCAGAGCTTGCAACGATAACTGGAATCGAAAGGATTATATGGGAATTAATGGGATCAGGGA CAATGAGAGCAAGAAGAAAGGCCTCTAGTTTGTTGAGGACTGTAAAAAGATGGGCAGCTGGTTTGGATGGTGATTTTTTGGAGGGTCATAGTACGGTTGC AACTTCGAGTAGTTCCTCATCAAGAGTGGTCATATCAGTTTAA
AA sequence Show only first row Show all	>Potri.016G134000.1 pacid=42810139 polypeptide=Potri.016G134000.1.p locus=Potri.016G134000 ID=Potri.016G134000.1.v4.1 annot-version=v4.1 MAIIPPQVFPPRKRRPSAGAFIPPKFSDQRLLQSLFLLSQEISSLKPLPFLLKRNSLSIIRKAKILAILFEELLKKPILVLSPTLLCFEEMYLVLQRIKT LLEDCVNGSKMWLLMQSDSVANNFHELTVELATLLDIFSVKEVEVSEDVEELFLLLRKQCSQAKVFVDKRDSSLRLDVLTMLDRIQKEIVPDNSKLAEIF DFLGLPNSLSCKEEIENLEDEVQNQKDEKAKSDMIALIGLVRYAKCVLFEPLTPGSDSKTKKLASDANIPADFRCPISLDLMRDPVVMATGQTYDRESIA LWIESGHNTCPKTGQALVHTSLIPNQALKNLIAMWCRELKIPFETAGDNNRTNGVIKNKAALEATKMTASFLVNKMSASQSMEAVNGVIYELRTLAKSNS DSRACIAEAGAIPVLARYLGSDVGVGSLNLQVNAVTAMLNLSILEANKTKIMENGKALNGVIEVLRTGATWEAKGNAAATIFSLSCVHSHRKLLGRKTRV IKGLMDLAKSGPPGPKRDALVAILNLAGDREAARRLVEEGVVDVVKEMINVLPVEAAAILEMVVKRGGIMAVAAAHNTIKKLGTLMREGSETARESAVAT LVTICRKGGAEMVAELATITGIERIIWELMGSGTMRARRKASSLLRTVKRWAAGLDGDFLEGHSTVATSSSSSSRVVISV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01830			ARM repeat superfamily protein...		Potri.016G134000 [exp]	0	1
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147400 [exp]	2.23	0.7821	Pt-DFR1.4
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.017G087800 [exp]	3.46	0.7428
					Potri.008G031400 [exp]	6.92	0.7533
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147601 [exp]	7.48	0.7295
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147701 [exp]	8.48	0.7222
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	18.00	0.7096
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.019G130200 [exp]	21.42	0.6916
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	21.90	0.7153
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.010G173900 [exp]	27.34	0.6982
AT3G30300			O-fucosyltransferase family pr...		Potri.017G101600 [exp]	33.82	0.6618

Compare expression of checked genes

Potri.016G134000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.