Plant FIBer expression Database

Potri.016G134100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G134100.2 pacid=42809902 polypeptide=Potri.016G134100.2.p locus=Potri.016G134100 ID=Potri.016G134100.2.v4.1 annot-version=v4.1
ATGGTTGGATTTAATAAAATCAATGGTGCTATCTTGATACTCTTGCTTGTCATGGCTATGTCTCAACCTGCACATGCCAGGCTCTTAGGTGGCTCTCTAC
TGCACAACGTCGATGCTATCCAGCAAGGACCAGACCTAGCTTTCTCGGGAGGAAATGATGTCTCAGAAGGGGAGGAAGTTAACAAGTACAGGCCCTTGCT
GCTTAATCTCCTTCCGAAGGGTCCCTTACCCCCATCTGGCCCTAGCAAGCGCACCAACAATGTCGTTAACTAA
AA sequence
>Potri.016G134100.2 pacid=42809902 polypeptide=Potri.016G134100.2.p locus=Potri.016G134100 ID=Potri.016G134100.2.v4.1 annot-version=v4.1
MVGFNKINGAILILLLVMAMSQPAHARLLGGSLLHNVDAIQQGPDLAFSGGNDVSEGEEVNKYRPLLLNLLPKGPLPPSGPSKRTNNVVN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G134100
[exp]
0 1
AT5G37490 ARM repeat superfamily protein... Potri.015G031000
[exp]
3.60 0.9614
AT1G58290 AtHEMA1, HEMA1 Arabidopsis thaliana hemA 1, G... Potri.009G080600
[exp]
5.09 0.9543
AT4G20780 CML42 calmodulin like 42 (.1) Potri.016G142000
[exp]
5.65 0.9440
AT5G43650 bHLH BHLH92, bHLH092 basic helix-loop-helix (bHLH) ... Potri.010G077000
[exp]
8.94 0.9472
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Potri.014G047000
[exp]
11.18 0.9466 ERF7
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Potri.014G046600
[exp]
12.96 0.9448
AT4G37850 bHLH bHLH025 basic helix-loop-helix (bHLH) ... Potri.005G095250
[exp]
15.19 0.9512
AT5G54490 PBP1 pinoid-binding protein 1 (.1) Potri.019G120600
[exp]
20.49 0.9442
AT1G53903 Protein of unknown function (D... Potri.001G163400
[exp]
24.37 0.9419
AT3G50940 P-loop containing nucleoside t... Potri.007G019700
[exp]
27.94 0.9132

Potri.016G134100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.