Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06920 117 / 1e-29 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT5G01840 109 / 5e-27 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT2G30400 108 / 3e-26 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT5G58360 99 / 2e-23 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT4G18830 88 / 3e-19 OFP ATOFP5, OFP5 ovate family protein 5 (.1) AT5G19650 74 / 5e-15 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G18500 74 / 3e-14 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT3G52525 70 / 4e-14 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36026 67 / 9e-13 OFP Ovate family protein (.1) AT2G36030 62 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107700 [exp] 520 / 0 AT1G06920 116 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.013G155200 [exp] 275 / 2e-88 AT1G06920 130 / 3e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.019G128500 [exp] 261 / 8e-84 AT1G06920 129 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.004G062100 [exp] 110 / 3e-26 AT4G18830 104 / 9e-25 ovate family protein 5 (.1) Potri.006G156176 [exp] 84 / 5e-18 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.018G080100 [exp] 82 / 2e-17 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.007G028000 [exp] 77 / 2e-15 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.002G262500 [exp] 76 / 5e-15 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.004G003700 [exp] 72 / 5e-15 AT5G58360 70 / 1e-14 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006092 [exp] 189 / 4e-56 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10025241 [exp] 181 / 3e-53 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10014164 [exp] 148 / 2e-42 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10008589 [exp] 106 / 1e-25 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10042224 [exp] 105 / 6e-25 AT5G01840 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10015236 [exp] 97 / 9e-22 AT4G18830 112 / 1e-27 ovate family protein 5 (.1) Lus10011092 [exp] 85 / 4e-18 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10043243 [exp] 83 / 2e-17 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10041730 [exp] 72 / 1e-13 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10021302 [exp] 67 / 1e-12 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [poplar] [flax] Ovate Transcriptional repressor, ovate PF13724 [poplar] [flax] DNA_binding_2 DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G134200.2 pacid=42810037 polypeptide=Potri.016G134200.2.p locus=Potri.016G134200 ID=Potri.016G134200.2.v4.1 annot-version=v4.1 ATGGGCAACAATAGGTTTAGATTATCAGATATGATGCCCAATGCTTGGTTTTACAAGCTCAAAGACATGGGCAAAACAAGGAACCACAACACCACCACTC ATTCCACAAAGAAAAAACAAGCTACATCAGCAGCAGCAGCAGCTGTAGCTGAATCTCAGCAACCACCGTCCAAGCCAAAACATCCTCACTACAATTCTTG TCCGAGAAAATCATACTACAACACCAGGGAGCTTATCTCAAGTGACCAAAAATTTCACACCTCCCCAAGAAACTCAAAATCCACAGACACCCTTTTTCCT GACCCACCAAGAAGATCATCGAAACAAAGGGCTAGGAAAAGGACCATCAAGTCCTCCTCTCCTAAGCTAGCCACCTCTTCTGTCTCTGCCGTTTGCAACT GCCGTGCTACCCTATGGACTAAACCAAATTCTCCTCCAGACTACTCAGCTTCTCTTTCTGATAGTTCTCTTGATCAGGAGACGGATTTCTCTGACTCATT TCCACCAGAATTCAGGTCTGACTGTGTTCTTGCTACTGACTCATTTGATAAAATGTTGTCTTGGTCAAGTTCTAATTGTGACTGCAAACTAGATTCTAAT AACTATGATGATATTGTTATCAACATGGATGAGAAATATATTGCTAGGAGATCAGATGATGTGGACGTGTTTCACAAAATATCTGATCTTGATCTCCCTC CCATCATAACAAAGCCCCCTAAATTTGATGATCAAGTGGAAGATTTCAAGAAGAAAGACACCCTGGAACCAGTCAAGTATAGAAGGAGTTCAGCTAAATA TGAGGAAACAAACGCTAATGCTTCTTTATCTGTTAAGGTTGTCAAAGAAGGGAGCATTACTGCAATGAAAGAACATAAGACTAATACTACTGTCAGGAGA AATTCTGTCACTTCACCAGGAGTTAGGCTAAGAGTCAATTCTCCAAGAATCTCAAATAGGAAAATCCAGGCATACAATAATGGTCGAAAGAGTGTGTCAT CAACTACAAGTTCATTGTCTCGGTCGCGAAGAAGCCTTTCGGATAGCTTGGCAGTTGTGAAATCTTCTTTTGATCCTCAGAAAGATTTCAGGGAATCAAT GATGGAGATGATAGTGGAGAACAATATCAAGGCATCAAAGGACTTAGAAGACCTTCTTGCTTGTTATCTTTCACTCAATTCTGATGAATATCATGACCTT ATTATTAAGGTGTTCAAGCAAATCTGGTTTGATCTCTCTGACATCAAGTTGCAGTGA
AA sequence Show only first row Show all	>Potri.016G134200.2 pacid=42810037 polypeptide=Potri.016G134200.2.p locus=Potri.016G134200 ID=Potri.016G134200.2.v4.1 annot-version=v4.1 MGNNRFRLSDMMPNAWFYKLKDMGKTRNHNTTTHSTKKKQATSAAAAAVAESQQPPSKPKHPHYNSCPRKSYYNTRELISSDQKFHTSPRNSKSTDTLFP DPPRRSSKQRARKRTIKSSSPKLATSSVSAVCNCRATLWTKPNSPPDYSASLSDSSLDQETDFSDSFPPEFRSDCVLATDSFDKMLSWSSSNCDCKLDSN NYDDIVINMDEKYIARRSDDVDVFHKISDLDLPPIITKPPKFDDQVEDFKKKDTLEPVKYRRSSAKYEETNANASLSVKVVKEGSITAMKEHKTNTTVRR NSVTSPGVRLRVNSPRISNRKIQAYNNGRKSVSSTTSSLSRSRRSLSDSLAVVKSSFDPQKDFRESMMEMIVENNIKASKDLEDLLACYLSLNSDEYHDL IIKVFKQIWFDLSDIKLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.016G134200 [exp]	0	1
AT5G22930			Protein of unknown function (D...		Potri.008G032500 [exp]	2.23	0.8129
					Potri.001G456700 [exp]	4.24	0.7830
AT4G03965			RING/U-box superfamily protein...		Potri.002G224200 [exp]	15.87	0.8033
AT1G76520			Auxin efflux carrier family pr...		Potri.011G145600 [exp]	47.81	0.7590
AT1G21090			Cupredoxin superfamily protein...		Potri.005G192800 [exp]	61.13	0.7285
AT3G23750			Leucine-rich repeat protein ki...		Potri.018G141000 [exp]	72.64	0.7370	Pt-RHG4.1
AT1G49330			hydroxyproline-rich glycoprote...		Potri.009G113900 [exp]	101.24	0.6986
AT1G01300			Eukaryotic aspartyl protease f...		Potri.002G171700 [exp]	131.22	0.7123
AT3G07340	bHLH	bHLH062	basic helix-loop-helix (bHLH) ...		Potri.002G248500 [exp]	139.49	0.6689
AT5G22930			Protein of unknown function (D...		Potri.009G006000 [exp]	144.78	0.7081

Compare expression of checked genes

Potri.016G134200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.