Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38500 244 / 2e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G79760 52 / 2e-07 DTA4 downstream target of AGL15-4 (.1) AT4G21200 44 / 0.0001 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189400 [exp] 95 / 8e-22 AT1G79760 170 / 4e-50 downstream target of AGL15-4 (.1) Potri.011G047800 [exp] 79 / 4e-16 AT1G79760 103 / 1e-24 downstream target of AGL15-4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006093 [exp] 209 / 1e-64 AT2G38500 179 / 1e-52 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038277 [exp] 75 / 9e-15 AT1G79760 170 / 1e-49 downstream target of AGL15-4 (.1) Lus10025825 [exp] 61 / 7e-10 AT1G79760 176 / 9e-52 downstream target of AGL15-4 (.1) Lus10025240 [exp] 0 / 1 AT2G38500 134 / 3e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G134500.1 pacid=42809022 polypeptide=Potri.016G134500.1.p locus=Potri.016G134500 ID=Potri.016G134500.1.v4.1 annot-version=v4.1 ATGCCTATAACACGATGCACAAGCGAACTAAACCTCCCAGCACCACCTCCTTCACCGATCCCCACAGGCAGAGGTACACGTTCTGCTGCCAATGACATCT TGATAGATTACCTCGAAAAGTCCTTAAACGTCCCTGACCTTACCTTGCCTGGACCATATATTCCTCTTAACAAACATCAAAATATTCCTGCCGCAATCAG TTACCGATTGTTGAAATCCAGAGATTATGAGAGTCAAGATCGGCTTTTGAAGTCGGTTAAGGAATTCAGGGCGTTTAAGGTTCTTGATCATGGGATTTCG GACGAGGAGTTGGGGTTCTTGGTCAAAGAAGCCGACCTGGTTTTCCGTGTTTTGGAGCCGACAAATGTGGGATTTCGGAGAAATTATCAACAGGAGATAG TGTGGGTTTTGTCTGGCAATGAAAGAATGTCATTGGCGCGAGAGTTTGCAGGAGCTGAAAGATTTCGTGATTTTAGCGAAAAGATGGACAATGTAGCAAG TAAACTTGATGCAATTGCACAAGAACTGTGTAAAGTTTTAGTCGAAAACACAGGCAAACAGCATTTTGGGAAGACAGTGACAACGCAAGGGAAAGAGTCC ATCCTTAGCTTGTTCAGATACAACCACAAAAATGAAACCAGATCGAAACCAACCTTGCTCAATGACGAAAACAGGAAATCTTCTGATCATGCCTTGTGTC TCCATTTTCCCACGATGCAATCTCAATTTTCAGTCCAGTCAGACCAAGGTCCTCTGTCTTTTGATGCAGGGCCAGACAGTATTGTTGTCACTGTTGGAAA ACATTTAGAGGAATGGAGCCAGGGAGATTCCGAAAGTGTTTCTGGGGAAATAATCTGTGAGCCACACCTACAAGATGGTCAAGCTTCTTTCTTGATAGAG CTCCAGTGTTTAACTTCAAATTTGGATATCAGTACAAAGAGAGATTATGACACAATTTCTCTAAGGGATCAGATTCTAATTGGGTTAATCATAGCTTTCT TGTACAATGTTTATGCGTTTTTATGGTCATGA
AA sequence Show only first row Show all	>Potri.016G134500.1 pacid=42809022 polypeptide=Potri.016G134500.1.p locus=Potri.016G134500 ID=Potri.016G134500.1.v4.1 annot-version=v4.1 MPITRCTSELNLPAPPPSPIPTGRGTRSAANDILIDYLEKSLNVPDLTLPGPYIPLNKHQNIPAAISYRLLKSRDYESQDRLLKSVKEFRAFKVLDHGIS DEELGFLVKEADLVFRVLEPTNVGFRRNYQQEIVWVLSGNERMSLAREFAGAERFRDFSEKMDNVASKLDAIAQELCKVLVENTGKQHFGKTVTTQGKES ILSLFRYNHKNETRSKPTLLNDENRKSSDHALCLHFPTMQSQFSVQSDQGPLSFDAGPDSIVVTVGKHLEEWSQGDSESVSGEIICEPHLQDGQASFLIE LQCLTSNLDISTKRDYDTISLRDQILIGLIIAFLYNVYAFLWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Potri.016G134500 [exp]	0	1
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.005G061600 [exp]	2.00	0.9564
					Potri.006G056101 [exp]	2.44	0.9560
AT3G01810			unknown protein		Potri.001G333200 [exp]	3.16	0.9380
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.006G035400 [exp]	4.24	0.9368	TUB17,TUB6.1
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.018G052500 [exp]	4.89	0.9398
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G125284 [exp]	5.29	0.9358
AT1G03080			kinase interacting (KIP1-like)...		Potri.003G164200 [exp]	6.32	0.9266
AT3G22970			Protein of unknown function (D...		Potri.005G216900 [exp]	8.94	0.9168
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.007G047000 [exp]	9.94	0.9299
AT3G58600			Adaptin ear-binding coat-assoc...		Potri.013G117900 [exp]	10.19	0.9220

Compare expression of checked genes

Potri.016G134500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.