Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51630 591 / 0 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 572 / 0 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G22420 447 / 9e-151 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G48260 441 / 3e-149 WNK3 with no lysine (K) kinase 3 (.1) AT5G28080 397 / 1e-132 WNK9 Protein kinase superfamily protein (.1.2) AT3G04910 400 / 8e-131 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT1G49160 385 / 4e-127 WNK7 Protein kinase superfamily protein (.1.2) AT1G64630 377 / 3e-124 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1) AT5G41990 377 / 1e-123 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT3G18750 371 / 2e-121 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G155100 [exp] 665 / 0 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.019G128600 [exp] 645 / 0 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.015G084600 [exp] 454 / 1e-153 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.012G086700 [exp] 453 / 5e-153 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.003G145300 [exp] 412 / 7e-137 AT5G41990 609 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.014G101500 [exp] 408 / 4e-134 AT3G18750 564 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Potri.001G085500 [exp] 405 / 4e-134 AT5G41990 606 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Potri.005G049800 [exp] 404 / 5e-132 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 404 / 5e-132 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014165 [exp] 668 / 0 AT3G51630 609 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10022747 [exp] 591 / 0 AT3G51630 597 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10042223 [exp] 548 / 0 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1) Lus10008590 [exp] 543 / 0 AT5G58350 624 / 0.0 with no lysine (K) kinase 4 (.1) Lus10024192 [exp] 510 / 8e-177 AT5G58350 540 / 0.0 with no lysine (K) kinase 4 (.1) Lus10009921 [exp] 506 / 5e-175 AT5G58350 545 / 0.0 with no lysine (K) kinase 4 (.1) Lus10010547 [exp] 464 / 2e-156 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 461 / 9e-155 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10041947 [exp] 452 / 1e-152 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 447 / 1e-145 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.016G134600.1 pacid=42810060 polypeptide=Potri.016G134601.1.p locus=Potri.016G134600 ID=Potri.016G134600.1.v4.1 annot-version=v4.1 ATGTATAAGACTCGAGTTAGAGCATGTGTTGATGGAGCTAAGGCACAGCTTGGATATGTTGAGACCGACCCTTCTGGTCGGTATGGACGTTTCAGAGAAG TTCTTGGCAAAGGAGCCATGAAGACTGTGTACAAGGCATTTGATGAGGTTCTTGGAATGGAGGTGGCATGGAATCAAGTGAAGCTTCACGACGTCTTCCG CTCACCGGAGGAGTTGCAGCGGTTATACTCAGAAGTTCACCTCCTTAAGAACCTCAATCATGACTCCATCATCAAATTCTACACATCTTGGATTGACATT GATAGAAGAGCCTTCAACTTCATCACTGAAATGTTCACCTCCGGCACCTTAAGAGCGTATAGGAAAAAGTACCAGCGTGTAGATATTCGAGCAATCAAGA ACTGGTCGCGCCAAATCCTGCGCGGTCTTGCTTTTCTGCATGGCCATGATCCTCCTGTGATACATAGAGACCTCAAGTGTGACAACATCTTTATCAATGG ACATCTTGGACATGTAAAGATTGGAGATCTAGGCTTAGCTGCTGTTCTTCAGGGCTCACAACATGCCCACAGTGTCATAGGTACACCTGAATTTATGGCA CCAGAATTATATGAAGAGGATTATGATGAGCTGGTTGACATATATTCCTTTGGCATGTGTGTCTTAGAGATGCTCACTTTTGAGTATCCATATAGCGAGT GCTCCAATCCTGCTCAAATATACAAGAAAGTGACTTCTGGAAAGTTGCCAGAGGCATTCTATCGGATTGAAGACGTCGAAGCTCAAGAATTTATAGGGAA ATGTTTGGCGACTGCTTCAAAGAGGTTGCCAGCTCGAGAACTTTTGTTGGATCCATTTCTGGCTTCTGATGAAGCAGAATTGGGGACTATCCCCAAAGTT CCAAGTCCATGGTCAAGTCCTAAAGTAACAGAAGAGAAGATCATGCCATCTCTTTTGGCTGATCCAACAAAGGCCACAGAGATGACTGTCACAGGGACAA TGAATCCGCAAGATGATACAATTTTTCTCAAAGTGAAAATTTCTGAGAAGGATGGTCAGACCAGGAACATATACTTTCCCTTTGACATCATGAATGACAC TGCAATTGATGTTGCAATGGAGATGGTGAAAGAACTGGAGATCACTGACTGGGAGCCGTTCGAAATTGCTGATATGATAGAGGAGCAGATATCATCTTTA ATTCCCGGTTGGAAACAATGCAGCTCATCTCAAATCCATCATCCACAGCACTGCTTTAGCTATGAAGATGATGATGATGATGACCACAACGACGGACCTC GCCATCCTTTCTTTGCCAGTTCTTCTCATTCCTCTTCACAGGCTTCTCTTTTGGCTTTCAACTGTTCCTTTCAGACAAAACCTTGTCAAGGAAGAAATAT GACTTCTGCCCATGACTGGTTTGAAGGCGAGCTGTTTATCGATGATGATGCAAGTTCTCAAAGTTCTTTGAACTCTTTCAAGTACTCCACTTTGAATTAC AGCTCAGGAAATGAAGATGATTATGATGCAAGTTTAAGAGAAGTGCCCTTAGGCTTTGGAAAGATACACAAGTCTACAAGATTCTGTCCTGCAGACAGCT TGAGTGCAAAACAATATAAACATCGAAATGCGCGATTGGATTCAGGGGGATGTTGTAGCTCCAATCCACAGCGGAAGCTAAGCCGGATTCGCTCCCAAGT CGACGTGCGCAGCCAGTTGTTGCACCGGTCACTACTTGAGGAGATAAACAAGAGGCGCTTGTTCAAGACAGTTGGAGCTGTTGAAAATATTGGATATCAT GAGCCTGGTCTTCAAGATGATGATGAAAAGAAGAGATTTAAATGGTGA
AA sequence Show only first row Show all	>Potri.016G134600.1 pacid=42810060 polypeptide=Potri.016G134601.1.p locus=Potri.016G134600 ID=Potri.016G134600.1.v4.1 annot-version=v4.1 MYKTRVRACVDGAKAQLGYVETDPSGRYGRFREVLGKGAMKTVYKAFDEVLGMEVAWNQVKLHDVFRSPEELQRLYSEVHLLKNLNHDSIIKFYTSWIDI DRRAFNFITEMFTSGTLRAYRKKYQRVDIRAIKNWSRQILRGLAFLHGHDPPVIHRDLKCDNIFINGHLGHVKIGDLGLAAVLQGSQHAHSVIGTPEFMA PELYEEDYDELVDIYSFGMCVLEMLTFEYPYSECSNPAQIYKKVTSGKLPEAFYRIEDVEAQEFIGKCLATASKRLPARELLLDPFLASDEAELGTIPKV PSPWSSPKVTEEKIMPSLLADPTKATEMTVTGTMNPQDDTIFLKVKISEKDGQTRNIYFPFDIMNDTAIDVAMEMVKELEITDWEPFEIADMIEEQISSL IPGWKQCSSSQIHHPQHCFSYEDDDDDDHNDGPRHPFFASSSHSSSQASLLAFNCSFQTKPCQGRNMTSAHDWFEGELFIDDDASSQSSLNSFKYSTLNY SSGNEDDYDASLREVPLGFGKIHKSTRFCPADSLSAKQYKHRNARLDSGGCCSSNPQRKLSRIRSQVDVRSQLLHRSLLEEINKRRLFKTVGAVENIGYH EPGLQDDDEKKRFKW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Potri.016G134600 [exp]	0	1
AT2G24130			Leucine-rich receptor-like pro...		Potri.003G184100 [exp]	2.44	0.8379
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	3.87	0.8246	Pt-FRD3.1
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.015G029400 [exp]	4.89	0.7916
AT1G31050	bHLH	bHLH111	basic helix-loop-helix (bHLH) ...		Potri.008G142700 [exp]	6.92	0.7998
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.004G153100 [exp]	7.48	0.7917
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	7.74	0.8033	Pt-ATHK1.2
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Potri.003G204400 [exp]	8.94	0.7636
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.016G122801 [exp]	11.40	0.7707
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.005G082000 [exp]	13.41	0.7767	STGA1.3
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Potri.018G090300 [exp]	14.00	0.7456	Pt-VHA2.2

Compare expression of checked genes

Potri.016G134600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.