Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38510 598 / 0 MATE efflux family protein (.1) AT1G58340 406 / 2e-136 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G29140 397 / 4e-133 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT5G19700 387 / 2e-129 MATE efflux family protein (.1) AT5G52050 376 / 3e-125 MATE efflux family protein (.1) AT4G23030 361 / 2e-119 MATE efflux family protein (.1) AT1G71870 335 / 4e-109 MATE efflux family protein (.1) AT5G49130 315 / 2e-101 MATE efflux family protein (.1) AT1G71140 223 / 1e-66 MATE efflux family protein (.1) AT5G52450 223 / 3e-66 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G135600 [exp] 432 / 2e-146 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 429 / 3e-145 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.003G121400 [exp] 425 / 6e-144 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 415 / 1e-139 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.007G043100 [exp] 370 / 1e-122 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.010G011400 [exp] 358 / 4e-118 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 357 / 1e-117 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.013G115600 [exp] 352 / 7e-116 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 259 / 3e-80 AT5G52450 644 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025237 [exp] 625 / 0 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 514 / 2e-180 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10017836 [exp] 412 / 7e-139 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 408 / 9e-137 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10027417 [exp] 406 / 5e-136 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 382 / 6e-127 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10028230 [exp] 343 / 5e-112 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10009788 [exp] 318 / 9e-103 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10041994 [exp] 245 / 1e-74 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 236 / 3e-71 AT5G52450 507 / 1e-177 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.016G134800.2 pacid=42810582 polypeptide=Potri.016G134800.2.p locus=Potri.016G134800 ID=Potri.016G134800.2.v4.1 annot-version=v4.1 ATGTGCCCTGGTAGTGGTGGCAGTACTGATACAGAATCTCGAGGGGTTATAATTTGTGATGATTTGATTTCAAAAAATGGAGGAGGAGGAGACTACAAGA ATGAAGATACAATGAGAGTAAGAGGAGAGGTCAAGTTTGTACATGGTCTTCTCAGACGGTTTAGTGTCAATGGAAATGTAGAAAGTTTGCCACTGCAAGA GGTGGGAGAAGAGGTGGTGTCTCTAGCCAAGATAGCATGCCCTATAATAATGACAACTCTGCTTATTTTCTCAAGGTCTATTATATCTATGCTCTTCTTG GGTCATCTTGGGAAAAATGAATTAGCAGGAGGGTCACTAGCACTTGGGTTTGCAAACATCACTGGCCTCTCGGTGCTGAAAGGCTTAGCCATGGGAATGG ATCCTATCTGTGGACAAGCGTATGGGGCCAAGAGATGGTCAGTTCTTGGCCAAACCTACCAGAAAACTCTCTGTCTTCTGATTCTTGTTTGTATTCCCAT CTCCTTATTATGGCTAAATGTGGAACCAGTCTTTATACGCCTAGGTCAGGATCCAGATATCACTCATGTTGCGAAAATTTATCTGTCCTCCTGCATTCCT GAATTAATAGGTCAAGCTGTTCTTCACCCTATGAGATCCTTCCTTAGAACTCAAGGTTTGACAGCTCCTCTTACTGTAGCAGCAGTAGTTGCATTGATCC TCCACGCTCCAATCAACTACTTTTTGGTAATATACTTGAAGATGGGGGTAAAAGGGGTTGGATTAGCCCTTTCTTGTAACACGTTAAATTTAAACTTAGG CTTGCTGATTTATGTCACAGTTTCCAAAACACCATTGAAACCTTGGCATGGGGTTACAGCTCTCTCAATCTTCCACAGCTGGTGGCCATTGCTATCACTA GCATTACCTAGTGTCATCTCTGTATGCTTGGAGTGGTGGTGGTATGAGATCATGCTGTTTCTTTGTGGCTTACTCCGCAACCCGAAAGCAAGTGTGGCAG CTACAGGCATCCTCATTCAAACAGCGGGTATAATCTACTCGTTTCCATTTTCCCTGAGCATCGGTGTATCTACGCGAGTTGGCCATGCATTGGGCGCTGG ACAACCGTCTCGTGCGCAATGGACAACAATAATCGGTATCTGTCTCGCGTTCACATTCGGCCTATCTGCATCTGTTATCACAGCAGCCCTGAGATCAGTG TGGGGGAAGCTGTACACCGACGAGCCACAGATTCTTGACTTGATCTCAACCGGACTTCCACTACTCGGGTTATGTGAGCTTGCCAACTCTCCGCAAACAG CTGCCTGCGGAGTTCTAACAGGCACTGCCCGTCCTAAAGATGGCGCACGAATAAACTTATATTCCTTCTACTTGGTCGGATTGCCGGCTGCAATTCTCCT AACTTTCAAATGTAAAATTGGTTTTCCGGGGCTATGGTTTGGGCTACTAGCAGCACAGATTTGCTGTCTATGCATGATGCTGTATACTGTGGTTCAAACA GATTGGAGGCACCAGGCTAAAAGGGCTGAGGAGCTAACTGCAGCTATGGAAGATAATGATGATGATGACGACGACGAGATGGGGGATGATTTGGAAACAG GATTGCTTGCAACTGTTAATTGA
AA sequence Show only first row Show all	>Potri.016G134800.2 pacid=42810582 polypeptide=Potri.016G134800.2.p locus=Potri.016G134800 ID=Potri.016G134800.2.v4.1 annot-version=v4.1 MCPGSGGSTDTESRGVIICDDLISKNGGGGDYKNEDTMRVRGEVKFVHGLLRRFSVNGNVESLPLQEVGEEVVSLAKIACPIIMTTLLIFSRSIISMLFL GHLGKNELAGGSLALGFANITGLSVLKGLAMGMDPICGQAYGAKRWSVLGQTYQKTLCLLILVCIPISLLWLNVEPVFIRLGQDPDITHVAKIYLSSCIP ELIGQAVLHPMRSFLRTQGLTAPLTVAAVVALILHAPINYFLVIYLKMGVKGVGLALSCNTLNLNLGLLIYVTVSKTPLKPWHGVTALSIFHSWWPLLSL ALPSVISVCLEWWWYEIMLFLCGLLRNPKASVAATGILIQTAGIIYSFPFSLSIGVSTRVGHALGAGQPSRAQWTTIIGICLAFTFGLSASVITAALRSV WGKLYTDEPQILDLISTGLPLLGLCELANSPQTAACGVLTGTARPKDGARINLYSFYLVGLPAAILLTFKCKIGFPGLWFGLLAAQICCLCMMLYTVVQT DWRHQAKRAEELTAAMEDNDDDDDDEMGDDLETGLLATVN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38510			MATE efflux family protein (.1...		Potri.016G134800 [exp]	0	1
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.008G164466 [exp]	2.64	0.9638
AT3G18180			Glycosyltransferase family 61 ...		Potri.015G042200 [exp]	4.47	0.9589
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.002G080500 [exp]	5.19	0.9572
AT1G65870			Disease resistance-responsive ...		Potri.016G060700 [exp]	8.00	0.9511
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Potri.006G121900 [exp]	10.24	0.9502
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.001G216100 [exp]	10.95	0.9448
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G123400 [exp]	13.85	0.9471
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227400 [exp]	14.14	0.9463	Pt-CWINV.1
AT1G78780			pathogenesis-related family pr...		Potri.001G389400 [exp]	14.69	0.9328
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.001G134900 [exp]	14.93	0.8657

Compare expression of checked genes

Potri.016G134800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.