Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01850 487 / 4e-174 Protein kinase superfamily protein (.1) AT3G27560 380 / 2e-131 ATN1 Protein kinase superfamily protein (.1) AT5G40540 376 / 4e-130 Protein kinase superfamily protein (.1) AT5G50180 369 / 3e-127 Protein kinase superfamily protein (.1) AT5G66710 286 / 4e-94 Protein kinase superfamily protein (.1) AT3G50720 244 / 4e-78 Protein kinase superfamily protein (.1) AT3G50730 239 / 4e-76 Protein kinase superfamily protein (.1) AT1G62400 233 / 4e-74 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G31170 226 / 1e-70 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 221 / 1e-68 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G065500 [exp] 390 / 1e-135 AT5G50180 574 / 0.0 Protein kinase superfamily protein (.1) Potri.001G343900 [exp] 384 / 4e-133 AT5G50180 577 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 236 / 3e-74 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 235 / 6e-74 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 232 / 8e-73 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.011G022800 [exp] 229 / 2e-72 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 229 / 2e-72 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 229 / 9e-72 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.004G179457 [exp] 226 / 1e-70 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025154 [exp] 512 / 0 AT5G01850 523 / 0.0 Protein kinase superfamily protein (.1) Lus10025236 [exp] 484 / 3e-172 AT5G01850 493 / 3e-176 Protein kinase superfamily protein (.1) Lus10035233 [exp] 391 / 7e-136 AT5G50180 567 / 0.0 Protein kinase superfamily protein (.1) Lus10032086 [exp] 390 / 1e-135 AT5G50180 565 / 0.0 Protein kinase superfamily protein (.1) Lus10026034 [exp] 281 / 1e-92 AT5G66710 342 / 1e-115 Protein kinase superfamily protein (.1) Lus10020018 [exp] 230 / 1e-72 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 227 / 6e-71 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10015541 [exp] 230 / 5e-69 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10011173 [exp] 214 / 2e-65 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10015436 [exp] 213 / 1e-64 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.016G134900.1 pacid=42809099 polypeptide=Potri.016G134900.1.p locus=Potri.016G134900 ID=Potri.016G134900.1.v4.1 annot-version=v4.1 ATGAGTTGCGAGAGAAGGAGAGGAGGAGTGGAAATTTACGAGCAGAGAACTTCCGTTGAGGAAAACGGCTCTATTGATCAGAATCTGCTAATTGACCCTA AATTGTTGTTTATCGGAAATAAAATCGGCGAAGGAGCCCATGGTGAAGTTTATAAAGGAAGGTACGGTGATCTGATTGTGGCCATTAAGGTTCTTCATCC AGGGACCACGTCGGAGGAAAGAGCTGCGCTTGAGGATCGGTTTGCAAGAGAGGTTAATATGATGTCTCGAGTTAAACATGAGAATCTTGTCAAGTTTATT GGGGCTTGTAAGGATCCATTTATGGTGATTGTTACAGAGTTGTTACCAGGGATGTCACTCCGGAAGTACTTGGTTAGTATTCGTCCGAAACAGTTAGACC TCTATGTGGCCATAAATTTTGCTCTTGATGTTGCGCGAGCTATGGATTGTTTGCATGCTAATGGGATTATACACAGAGATCTTAAGCCAGACAATTTGTT GCTTACGGCAAATCAGAAGTCTGTGAAGCTCGCAGATTTTGGTCTTGCAAGAGAAGAAACTGTGACTGAGATGATGACTGCAGAAACTGGAACATACCGT TGGATGGCTCCTGAGTTGTACAGCACCGTGACACTGCGTCAGGGAGAAAAGAAGCATTACAATAACAAAGTTGATGTCTACAGCTTTGGAATTGTGTTAT GGGAGTTGTTGACCAACCGCATGCCATTTGAAGGCATGTCAAATTTGCAAGCTGCCTATGCTGCTGCTTTTAAGCAAGAGAGGCCTGCTCTTCCAGAGGA TGTATCCCCTGACCTCGCATTTATCATGCAGTCATGTTGGGTTGAAGACCCCAACTTGAGGCCTAGCTTCAACCAGATCATCCGGATGCTCAATGCATTT CTCTTCACACTCTCACCACCTTCACCCACACCATCCTTACCAGAATCTGACACCAATGAGGCAGCATCATCAAGTAATGGCACCATAACCGAGTTTTCTT CTCGCACAAGAGGAAAGTTTGCTTTCCTTCGCCAACTATTCACAGCTAAAAAGACCAGGAACACTCATTGA
AA sequence Show only first row Show all	>Potri.016G134900.1 pacid=42809099 polypeptide=Potri.016G134900.1.p locus=Potri.016G134900 ID=Potri.016G134900.1.v4.1 annot-version=v4.1 MSCERRRGGVEIYEQRTSVEENGSIDQNLLIDPKLLFIGNKIGEGAHGEVYKGRYGDLIVAIKVLHPGTTSEERAALEDRFAREVNMMSRVKHENLVKFI GACKDPFMVIVTELLPGMSLRKYLVSIRPKQLDLYVAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREETVTEMMTAETGTYR WMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPALPEDVSPDLAFIMQSCWVEDPNLRPSFNQIIRMLNAF LFTLSPPSPTPSLPESDTNEAASSSNGTITEFSSRTRGKFAFLRQLFTAKKTRNTH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01850			Protein kinase superfamily pro...		Potri.016G134900 [exp]	0	1
AT5G10190			Major facilitator superfamily ...		Potri.007G091800 [exp]	2.23	0.8331
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.018G011300 [exp]	2.82	0.8713
AT5G22540			Plant protein of unknown funct...		Potri.004G187100 [exp]	4.24	0.8628
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.001G070600 [exp]	5.47	0.8274
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Potri.003G147900 [exp]	5.74	0.7839
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.003G052400 [exp]	8.00	0.8238	GL2.1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.002G010700 [exp]	9.94	0.8236
AT5G05800			unknown protein		Potri.001G268908 [exp]	14.83	0.8217
					Potri.002G155700 [exp]	17.94	0.8272
					Potri.001G265000 [exp]	19.18	0.7965

Compare expression of checked genes

Potri.016G134900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.