Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29690 718 / 0 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) AT4G24290 438 / 2e-147 MAC/Perforin domain-containing protein (.1.2) AT1G28380 399 / 5e-132 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 368 / 1e-119 MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107900 [exp] 1120 / 0 AT1G29690 703 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 732 / 0 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 729 / 0 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 471 / 4e-160 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 429 / 9e-144 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 417 / 4e-139 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.008G136401 [exp] 416 / 5e-139 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 415 / 5e-138 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.011G057100 [exp] 412 / 2e-137 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025153 [exp] 893 / 0 AT1G29690 595 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 712 / 0 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 699 / 0 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10025235 [exp] 484 / 2e-168 AT1G29690 367 / 8e-123 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10035789 [exp] 451 / 5e-152 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10041285 [exp] 406 / 1e-134 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10012717 [exp] 404 / 4e-134 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 404 / 4e-134 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037426 [exp] 401 / 8e-133 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10037363 [exp] 400 / 8e-133 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF01823 [poplar] [flax] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Potri.016G135100.1 pacid=42809097 polypeptide=Potri.016G135100.1.p locus=Potri.016G135100 ID=Potri.016G135100.1.v4.1 annot-version=v4.1 ATGGGAGAGAGAGGAAGCGTTAATGCTGCAGCAATGCACACAGCCATGAACGCTGTGCAAGCTCTTGGGAGAGGATTTGATGTGAACTATGATAAAAGGT TGTTGTATTGTAAAGGAGTTGCTGGGTCTAAAGTGGTGGAGATTGATGGTGAACATACTAGAGATCTTTTGTTAGCTGGTGGGATTCTATTGCCTAATGT TTCCAGGGACATCAGGAGCTCTTTGGACCCAATTGGCCGCCAGAGTTCAGGTGTTTGCACCTTTCATGAGATGGTGGAGTACTTTAATCAAAAGGCTAAT CTATCAGGAGGTCTTCCTCTTGGTAGCTTCAATTCTGCATTTAGTTTTACCGGTTCAAAACATATTGATGCTGCAGCTACGAAGACCCTCTCGATGGATG GATATTATATCCCACTTGCCAAGGTCCAACTTAAGAGATCCCCCTTAGTGCTGCATGAAAATGTTATAAGGGCCGTGCCAACTTTCTGGGATCCTCCATC CTTGGCAAGCTTCATTGAAAATTTTGGGACGCATGTTATCACTTCTGTAACTATTGGTGGTAAGGATGTGATATATGTTAAACAACACCAGTCATCGCCT TTGTCAACCATGGAGATTAAACACTACGTGCAGGATATTGGAAATCAGAGGTTCTCTGACACAGAGGGCCATATGAGCTCAGGTCCAATGAAACTCAAGG ATAAGGGTGGTGATTCAGGTATATTTAACAGCCAAGGGATATACCCTCAGCCAACTAGTGCGCCGTATCTTACTGGGAAAGAAGATGTTACTGTCATTTT CCGCAGGAGGGGAGGAGATGATCTGGAGCAAAATCATATCCGATGGGCAAGAACTGTAGAGTCATCTCCAGATGTCATTGAGATGACTTTTGTTCCTATC GCAGATCTCCTTGTTGGGGTGCCTGGAAAGGAGCATCTGAGTCGTGCAATTGCTCTATATCTTGAATACAAACCTCAGATTGAAGAGCTGAGATATTTTT TGGAGTTCCAGATTCCTCGAATTTGGGCTCCTGTACAGGACAATATTCCAGGTCACCAAAGAAAGGAACCTGTTTGCCCTTCTTTGCAGTTCAGCATGAT GGGGCAAAAGCTTTATGTGAGTCAGGAGCAGATATCAGTAGGGCGCAAGCCCGTCACAGGTTTGCGATTATGTTTGGAAGGAGCCAAGCAGAATCGCCTG CGTATCCATCTTCAACACTTGGCATCTCTTCCGAAAATCCTTTTGCCATACTGGGACACCCATGTTGCAATTGGTGCTCCCAAGTGGCTGGGACCTGAGG AGCAGGATAGTCGATGGTTTGAACCAGTGAAATGGAAGAATTTCTCTCATGTGAGCTCTGCTCCAGTTGAGAACCCTGAAACCTTTATTGGTGACCAATC TTGTGTCTACATTGTCACTGGGGCTCAGCTTGGAGTGTGGGATTTCGGTTCAAGAAATGTCTTATACATGAAACTTTTGTATTCTAGGCTACCGGGCTGC ACGATACGAAGATCCTTGTGGGACCACATGCCAAATGATAAGTCAAAGAAAGTCCCCGCTGTAAATAATACTAACTCTGGTGACTCAAGTTCAGCCTCAA GAGAAAATGTTGCAGGGAACAAGCTGGCAAAGTTTGTTGATATGTCTGAGATGAGCAAAGGGCCACAAGATCCCCCAGGACATTGGCTAGTTACAGGCGG AAAGCTTGGTGTAGAGAAAGGCAGAATAGTTTTGAGAGTGAAATACTCCTTGCTGAATTATTGA
AA sequence Show only first row Show all	>Potri.016G135100.1 pacid=42809097 polypeptide=Potri.016G135100.1.p locus=Potri.016G135100 ID=Potri.016G135100.1.v4.1 annot-version=v4.1 MGERGSVNAAAMHTAMNAVQALGRGFDVNYDKRLLYCKGVAGSKVVEIDGEHTRDLLLAGGILLPNVSRDIRSSLDPIGRQSSGVCTFHEMVEYFNQKAN LSGGLPLGSFNSAFSFTGSKHIDAAATKTLSMDGYYIPLAKVQLKRSPLVLHENVIRAVPTFWDPPSLASFIENFGTHVITSVTIGGKDVIYVKQHQSSP LSTMEIKHYVQDIGNQRFSDTEGHMSSGPMKLKDKGGDSGIFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDLEQNHIRWARTVESSPDVIEMTFVPI ADLLVGVPGKEHLSRAIALYLEYKPQIEELRYFLEFQIPRIWAPVQDNIPGHQRKEPVCPSLQFSMMGQKLYVSQEQISVGRKPVTGLRLCLEGAKQNRL RIHLQHLASLPKILLPYWDTHVAIGAPKWLGPEEQDSRWFEPVKWKNFSHVSSAPVENPETFIGDQSCVYIVTGAQLGVWDFGSRNVLYMKLLYSRLPGC TIRRSLWDHMPNDKSKKVPAVNNTNSGDSSSASRENVAGNKLAKFVDMSEMSKGPQDPPGHWLVTGGKLGVEKGRIVLRVKYSLLNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29690		CAD1	constitutively activated cell ...		Potri.016G135100 [exp]	0	1
AT1G55270			Galactose oxidase/kelch repeat...		Potri.001G008000 [exp]	8.42	0.7253
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Potri.006G142800 [exp]	15.09	0.7738
AT1G67040			unknown protein		Potri.004G098300 [exp]	17.43	0.7713
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.012G062700 [exp]	19.28	0.7856
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.007G069600 [exp]	23.83	0.7786
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Potri.001G026700 [exp]	28.56	0.6959
AT5G60460			Preprotein translocase Sec, Se...		Potri.009G012000 [exp]	42.00	0.7689
AT1G25375			Metallo-hydrolase/oxidoreducta...		Potri.010G122000 [exp]	46.63	0.7611
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.001G068000 [exp]	51.52	0.7357
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Potri.001G294400 [exp]	78.10	0.7280

Compare expression of checked genes

Potri.016G135100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.