Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59320 94 / 6e-26 LTP3 lipid transfer protein 3 (.1) AT5G59310 93 / 1e-25 LTP4 lipid transfer protein 4 (.1) AT2G38540 89 / 7e-24 ATLTP1, LP1 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) AT3G51600 87 / 2e-23 LTP5 lipid transfer protein 5 (.1) AT3G51590 83 / 9e-22 LTP12 lipid transfer protein 12 (.1) AT2G38530 82 / 3e-21 cdf3, LP2, LTP2 cell growth defect factor-3, lipid transfer protein 2 (.1) AT5G01870 76 / 4e-19 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G08770 76 / 1e-18 LTP6 lipid transfer protein 6 (.1.2) AT4G33355 67 / 2e-15 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT2G15050 62 / 1e-13 LTP7, LTP lipid transfer protein 7, lipid transfer protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G135700 [exp] 162 / 3e-53 AT5G59310 92 / 3e-25 lipid transfer protein 4 (.1) Potri.016G135400 [exp] 126 / 1e-38 AT5G59320 109 / 3e-32 lipid transfer protein 3 (.1) Potri.006G108100 [exp] 116 / 5e-35 AT2G38540 121 / 6e-37 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.004G086500 [exp] 105 / 2e-30 AT2G38540 124 / 5e-38 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.004G086600 [exp] 103 / 7e-30 AT2G38540 122 / 3e-37 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.016G136000 [exp] 84 / 4e-22 AT5G01870 113 / 1e-33 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.016G135800 [exp] 82 / 5e-21 AT5G01870 111 / 1e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G232700 [exp] 74 / 6e-18 AT2G18370 93 / 1e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G232900 [exp] 72 / 2e-17 AT2G18370 100 / 3e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025148 [exp] 89 / 1e-23 AT5G01870 105 / 6e-30 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10025230 [exp] 88 / 4e-23 AT3G08770 105 / 4e-30 lipid transfer protein 6 (.1.2) Lus10026418 [exp] 85 / 2e-22 AT5G59320 115 / 2e-34 lipid transfer protein 3 (.1) Lus10022745 [exp] 83 / 1e-21 AT5G59310 103 / 1e-29 lipid transfer protein 4 (.1) Lus10014167 [exp] 82 / 3e-21 AT5G59310 102 / 2e-29 lipid transfer protein 4 (.1) Lus10025151 [exp] 80 / 2e-20 AT5G59320 103 / 1e-29 lipid transfer protein 3 (.1) Lus10025231 [exp] 79 / 1e-19 AT5G59320 99 / 5e-28 lipid transfer protein 3 (.1) Lus10022744 [exp] 78 / 2e-19 AT2G38540 86 / 1e-22 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Lus10015278 [exp] 77 / 3e-19 AT5G59310 110 / 1e-32 lipid transfer protein 4 (.1) Lus10000082 [exp] 76 / 8e-19 AT2G38540 88 / 2e-23 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [poplar] [flax] Prolamin PF00234 [poplar] [flax] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Potri.016G135500.2 pacid=42809663 polypeptide=Potri.016G135500.2.p locus=Potri.016G135500 ID=Potri.016G135500.2.v4.1 annot-version=v4.1 ATGGCTAATGCTAAGCTGATCTGTGCTCTCTTGCTATGCATACTGGTAACTGCCCCCATGTTGAACATTGAAGCCTCGATACCATGTCATACTGTGAAAG TTGACTTGGCAACGTGCCTTGGCTACTTTAGGAAGGGGGGGAGTGTTCCTAACAGTTGCTGCAAAGGAGTTCAGAATGTCAACAACGCTGCTAGAACCAC CAAGGACCGCCGAGACACTTGTAATTGCTTGAAAACAACTGCCAAACAGTATCATATAGTCAATTTCAGGTTCGCAGCTGATCTCCCTCGCATCTGCAGA GTTAAAATTCCTTACCGTATTAGCGCCTCCATTGACTGCTCCAGGATTAAGTGA
AA sequence Show only first row Show all	>Potri.016G135500.2 pacid=42809663 polypeptide=Potri.016G135500.2.p locus=Potri.016G135500 ID=Potri.016G135500.2.v4.1 annot-version=v4.1 MANAKLICALLLCILVTAPMLNIEASIPCHTVKVDLATCLGYFRKGGSVPNSCCKGVQNVNNAARTTKDRRDTCNCLKTTAKQYHIVNFRFAADLPRICR VKIPYRISASIDCSRIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135500 [exp]	0	1
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G065600 [exp]	1.41	0.9751
AT5G63180			Pectin lyase-like superfamily ...		Potri.001G367800 [exp]	4.47	0.9634
AT5G51720			2 iron, 2 sulfur cluster bindi...		Potri.012G130600 [exp]	6.48	0.9665
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Potri.001G160400 [exp]	9.79	0.9736	ZIP4.2
AT3G47430		PEX11B	peroxin 11B (.1)		Potri.001G124400 [exp]	10.81	0.9638
AT1G58684			Ribosomal protein S5 family pr...		Potri.001G256800 [exp]	11.53	0.9656
AT1G75280			NmrA-like negative transcripti...		Potri.013G103701 [exp]	11.91	0.9736
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Potri.002G023600 [exp]	13.67	0.9628
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Potri.018G063300 [exp]	13.92	0.9343	Pt-PRXQ.2,PtrcPrx_Q.2
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G144000 [exp]	14.28	0.9715

Compare expression of checked genes

Potri.016G135500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.