Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08760 618 / 0 ATSIK Protein kinase superfamily protein (.1) AT5G15080 222 / 1e-65 Protein kinase superfamily protein (.1) AT3G55450 219 / 1e-65 PBL1 PBS1-like 1 (.1.2) AT3G28690 217 / 3e-65 Protein kinase superfamily protein (.1.2.3) AT3G01300 214 / 1e-62 Protein kinase superfamily protein (.1) AT3G09830 211 / 2e-62 Protein kinase superfamily protein (.1.2) AT2G28940 209 / 2e-61 Protein kinase superfamily protein (.1.2) AT2G39110 208 / 3e-61 Protein kinase superfamily protein (.1) AT5G03320 207 / 7e-61 Protein kinase superfamily protein (.1) AT5G02290 204 / 4e-60 NAK Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G108200 [exp] 832 / 0 AT3G08760 573 / 0.0 Protein kinase superfamily protein (.1) Potri.001G240500 [exp] 222 / 3e-66 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G194700 [exp] 222 / 6e-66 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 221 / 1e-65 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.006G126000 [exp] 221 / 1e-65 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.018G127300 [exp] 218 / 7e-65 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 218 / 8e-65 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 216 / 1e-63 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 216 / 2e-63 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022742 [exp] 712 / 0 AT3G08760 578 / 0.0 Protein kinase superfamily protein (.1) Lus10014168 [exp] 708 / 0 AT3G08760 573 / 0.0 Protein kinase superfamily protein (.1) Lus10038087 [exp] 218 / 7e-65 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10006643 [exp] 218 / 7e-65 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10030668 [exp] 217 / 1e-63 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 216 / 2e-63 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10023794 [exp] 211 / 4e-63 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10038711 [exp] 213 / 2e-62 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 210 / 3e-61 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 205 / 3e-60 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.016G136400.2 pacid=42808926 polypeptide=Potri.016G136400.2.p locus=Potri.016G136400 ID=Potri.016G136400.2.v4.1 annot-version=v4.1 ATGAGCTGGTGTTTAAAGGTTTCAAGAATTGAATGTAATAAGATGGGTTGTTTCACTGTTTTAAAGTGCAAAAAGAAAAGGCCTGAGCCGTCAGTTTCCA TCAAGCGTGTCAGTCCTAAGGAGCAAATACCAACTACTCTACCTGAGCCACAGGTCCCAACACGTTCATTGCAGTCAGCACCCCCTAGTTTTCGGACCAG AGTGAAGCCTGTTCAACCAGAAAACAAAGTACCTAGCAACAGGGCACGGGCATTATCGGCTCCAGAAAGCCTTGATGCAGCAGAACAAGATGCTCTTGCA TCAGCTGAATATGATGAGCAAGAGGAGTCAAAAAACCGAATTGGAATTTCAAAGGAACAACGGCTACCGGGTCCACAACCTCTTCCACTCCCTTCACCTC AGGGTGGTGCTATACTGAAGCCTATGAGTAGCTTTAAATCAGTGAATAGCAGTGGCTCTCTTTATGCTTCTGGTCCGTTGCCACTGCCTCGCAGTGGAAC ATACAGTGGAACACTCAGGAACTTTCCATATGAAGAAATTCAATCTGCTTGCTGCAATTTCTCCTCAGATCGATGTGTCTCTGAAGGCCTTTCTTCCATA ATGTTCAGGGCTTCCTTTGGAGATGATACTGCAAGTTCGAAGAAGTTTGAAGCTAGTGTTATTCGCCTTAACCCATCTCCTCAGGGTTTAAAAGAATTTA TTAATGAGGTTAATACCCTTGCATCTTTGCAACATCCAAACTTATGCAAGTTGCTTGGTTATAATGCACGTGATGGCTCAGACCAGAGAATGCTGGTCTA TGAGAGGCTTTATCATGGAAGCTTGGACCGGTTACTGTATGGAAGGTCTGATGGCCCTCCCATTGACTGGAATACCAGGATGAAAATTGCTTTATGTGCT GCGCAAGGTCTTGCTTTCTTGCATGAAGAAGGGCCTTTCCAGGCAATGTACAATGAGTTTTCTACCGCCAACATACAAATTGACAAAGACTTTAGTGCAA AGCTTTCAGGATATGGTTGTGTTGGCCACATCCCTGAAACAGAGATCTCTAACAGTACAGCGGCTGCCGCAAATCTCTCTGTAGAGACAGTAGAGAGAGG GCTATTGACTCCGAAGAGCAATGTATGGAGCTTTGGAATTTTTCTTCTTGAACTGCTCACTGGCCGGAAAAATCTTGATAGTCGTCATCCTAGAGAAGAG AGGAACTTGGTCAAGTGGACCCGGCCATTTCTAGCTGATGACTGTCGACTATCATTGATTATGGATCCTCAACTAAAATGCCGTTTCCCTGCAAAAGCAG CCCGCACATTGGCAGACATTGCTCTAAGATGTCTTCAGAAGGATCCTTTAGAAAGACCAACTATGAGAACCATTGTGGAACATCTCAAAGTCATACAAGA CATGAAATACTCCAGTCGCTTTCCTCTGCAAGAGCCAGCAGCAGTTGCTGGTAAACAAATGTCCAGATCTCCTAGTCTCAATGGGATCATCACCCCAGCA CCAAGGTTAAGTTTCTCACCATCTCCACCATCCAGAGCCCGGCCATCCATTTCCCCTACCAGGCCTCGAGCATTGCCTCCGTCTCTACCTCCCCGTGCTT GTTCCTCAACTCTCTCTCTTGAGGAGCTAGAACGGCAAGAAAGCAGGAAATCATCTTCGTCGGCTGTTCGAAGGCCAGGTGTTGAAGGATTTTGA
AA sequence Show only first row Show all	>Potri.016G136400.2 pacid=42808926 polypeptide=Potri.016G136400.2.p locus=Potri.016G136400 ID=Potri.016G136400.2.v4.1 annot-version=v4.1 MSWCLKVSRIECNKMGCFTVLKCKKKRPEPSVSIKRVSPKEQIPTTLPEPQVPTRSLQSAPPSFRTRVKPVQPENKVPSNRARALSAPESLDAAEQDALA SAEYDEQEESKNRIGISKEQRLPGPQPLPLPSPQGGAILKPMSSFKSVNSSGSLYASGPLPLPRSGTYSGTLRNFPYEEIQSACCNFSSDRCVSEGLSSI MFRASFGDDTASSKKFEASVIRLNPSPQGLKEFINEVNTLASLQHPNLCKLLGYNARDGSDQRMLVYERLYHGSLDRLLYGRSDGPPIDWNTRMKIALCA AQGLAFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHIPETEISNSTAAAANLSVETVERGLLTPKSNVWSFGIFLLELLTGRKNLDSRHPREE RNLVKWTRPFLADDCRLSLIMDPQLKCRFPAKAARTLADIALRCLQKDPLERPTMRTIVEHLKVIQDMKYSSRFPLQEPAAVAGKQMSRSPSLNGIITPA PRLSFSPSPPSRARPSISPTRPRALPPSLPPRACSSTLSLEELERQESRKSSSSAVRRPGVEGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08760		ATSIK	Protein kinase superfamily pro...		Potri.016G136400 [exp]	0	1
AT2G11890			adenylate cyclases (.1.2)		Potri.006G062000 [exp]	1.41	0.7658
AT2G24360			Protein kinase superfamily pro...		Potri.018G001800 [exp]	5.09	0.7815
AT4G39140			RING/U-box superfamily protein...		Potri.009G120000 [exp]	5.29	0.7339
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G130800 [exp]	6.00	0.7272
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020100 [exp]	7.41	0.7296
AT2G01060	GARP		myb-like HTH transcriptional r...		Potri.006G000800 [exp]	18.76	0.7086
AT1G12020			unknown protein		Potri.004G001800 [exp]	26.26	0.6191
AT1G34750			Protein phosphatase 2C family ...		Potri.002G097200 [exp]	29.54	0.7357
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.009G120800 [exp]	30.38	0.6667
AT5G42050			DCD (Development and Cell Deat...		Potri.003G141900 [exp]	33.00	0.7002

Compare expression of checked genes

Potri.016G136400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.