Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08740 323 / 8e-113 elongation factor P (EF-P) family protein (.1) AT4G26310 92 / 2e-22 elongation factor P (EF-P) family protein (.1), elongation factor P (EF-P) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G004300 [exp] 78 / 4e-17 AT4G26310 249 / 3e-83 elongation factor P (EF-P) family protein (.1), elongation factor P (EF-P) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022740 [exp] 338 / 9e-119 AT3G08740 321 / 4e-112 elongation factor P (EF-P) family protein (.1) Lus10007884 [exp] 70 / 5e-14 AT4G26310 252 / 7e-84 elongation factor P (EF-P) family protein (.1), elongation factor P (EF-P) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF01132 [poplar] [flax] EFP Elongation factor P (EF-P) OB domain CL0107 [poplar] [flax] KOW PF08207 [poplar] [flax] EFP_N Elongation factor P (EF-P) KOW-like domain CL0021 [poplar] [flax] OB PF09285 [poplar] [flax] Elong-fact-P_C Elongation factor P, C-terminal
Representative CDS sequence Show only first row Show all	>Potri.016G136600.1 pacid=42809141 polypeptide=Potri.016G136600.1.p locus=Potri.016G136600 ID=Potri.016G136600.1.v4.1 annot-version=v4.1 ATGGCGCGAACTACAACTGCCACTCTCTCTTCACCTTACTGCATCCTTCACCGTTCCTCCTTTTCATCTAAGCCCTCCTTTCTTCCATTGCGCATTTTCC CCAAAACACCATCGCCCCCCACTTTTCCAAGGATTTATGCTTTGTCTAGTAATGATATCAAAGTGGGCTCCAACATTGAAGTTGATGGGGCTCCTTGGCG AGTCCTAGAGTTTCTGCATGTAAAACCAGGAAAGGGGGCGGCATTTGTGAGGACCAAGATGCGTAATTATGTTACAGGAAATACTGTTGATAAAACTTTC CGAGCTGGAAGTACGATTGAAGAGGCAAATGTATTCAAGGAGGCAAAGCAGTTCACGTACAAAGATGGAGTTCAGTTTGTTTTCATGGACTTGAGTACTT TTGAAGAATACCGTCTCAATGAGGCAGATGTCGGAGATAAGACAAAGTGGCTAAAAGAGGGAATGGACTGCAATTTGCTATTTTGGAATGGAAAAGTTAT TGATTTTGAACTTCCAATCACAGTTCAACTGACTGTTGTTGATGTGGATCCTGGGCTCAAAGGTGACACTGCTCAAGGTGGAACAAAGCCAGCAACTCTG GACACAGGTGCTGTAGTTAATGTTCCATTGTTTGTTAACATCGGCGCAGAAATATTGGTAGACACAAGAACTGGACAATACATGAGCAGGGCATGA
AA sequence Show only first row Show all	>Potri.016G136600.1 pacid=42809141 polypeptide=Potri.016G136600.1.p locus=Potri.016G136600 ID=Potri.016G136600.1.v4.1 annot-version=v4.1 MARTTTATLSSPYCILHRSSFSSKPSFLPLRIFPKTPSPPTFPRIYALSSNDIKVGSNIEVDGAPWRVLEFLHVKPGKGAAFVRTKMRNYVTGNTVDKTF RAGSTIEEANVFKEAKQFTYKDGVQFVFMDLSTFEEYRLNEADVGDKTKWLKEGMDCNLLFWNGKVIDFELPITVQLTVVDVDPGLKGDTAQGGTKPATL DTGAVVNVPLFVNIGAEILVDTRTGQYMSRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08740			elongation factor P (EF-P) fam...		Potri.016G136600 [exp]	0	1
AT2G35490			Plastid-lipid associated prote...		Potri.001G137900 [exp]	1.41	0.9882
AT3G20680			Domain of unknown function (DU...		Potri.011G132500 [exp]	1.73	0.9837
AT5G65840			Thioredoxin superfamily protei...		Potri.014G012100 [exp]	2.00	0.9873
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Potri.005G161000 [exp]	3.16	0.9794
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Potri.006G220400 [exp]	4.89	0.9821
AT5G57345			unknown protein		Potri.006G165800 [exp]	5.00	0.9816
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Potri.004G152900 [exp]	6.24	0.9769	Pt-CLPP6.2
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.016G068300 [exp]	6.48	0.9806	CP33.2
AT3G58830			haloacid dehalogenase (HAD) su...		Potri.002G060600 [exp]	7.93	0.9799
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.016G072200 [exp]	8.12	0.9791

Compare expression of checked genes

Potri.016G136600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.