Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62680 175 / 4e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 172 / 3e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16710 167 / 1e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 166 / 2e-44 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 166 / 6e-44 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62590 164 / 2e-43 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39710 161 / 3e-42 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G41170 158 / 3e-42 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G64580 158 / 4e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 160 / 6e-42 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G217600 [exp] 176 / 3e-47 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 169 / 2e-45 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G150100 [exp] 166 / 8e-45 AT1G62930 442 / 8e-149 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 167 / 1e-44 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G014500 [exp] 167 / 3e-44 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G025600 [exp] 165 / 1e-43 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 164 / 1e-43 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 163 / 2e-43 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G074500 [exp] 163 / 2e-43 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014170 [exp] 306 / 7e-99 AT1G09680 154 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022739 [exp] 242 / 1e-74 AT5G39710 144 / 2e-37 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022861 [exp] 160 / 2e-42 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027914 [exp] 160 / 5e-42 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 160 / 9e-42 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 159 / 5e-41 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 158 / 7e-41 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041421 [exp] 157 / 2e-40 AT2G16880 668 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 155 / 2e-40 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10013841 [exp] 156 / 4e-40 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.016G136700.1 pacid=42809467 polypeptide=Potri.016G136700.1.p locus=Potri.016G136700 ID=Potri.016G136700.1.v4.1 annot-version=v4.1 ATGATGTCGATGTCTTTGCCTTCTCCATGCTCTCCGCTGTCTGAATTCCTTCCATCTCCTTCACTTAGCAACCACCCCGTTTTCTTCAACAACACCAGCA AGCTCTGTTGCCACAAATTTTCTAGCCTCAAGCTTGTTTTCATTCCAGCAGCGTCACTATCCACCACAAAATCGTATCCCACAGAAACCACAGTGTTACA TAGTCCAATTCTTGGTAACAAGGAGCAAAGATTATACCCAAAAGAGGGTGAGGAACATAAGGGCTTGCCTATGAAAGAAGAAGAACAAGAAAGCCTGGAT TTTGATGAGAAAGCTAGTAAATTTCAGGTACTGGATCTTTTAAATGCAGTAAAAGCATTACCATGTAAAGAAAGAGTTGATTACATTGTCAGGGTTCTTG ATAAAGAGATTGGATTTTTTAACATCTCAGACTTCAATGATGTTCTCATGGCTTTGGTCACAGCCAATGAGTCTGATCTTGTCTTGAAATTGTACTCGGG TTTATCATGTTACAGTTTAGAGCCAAATTCTTGGACATTTTCAATCATGGTCAGGTGTCATTGCAAGAAAAAGGACCCTGGTGAGGCCAAAAGGGTTTTA GACCAGATGATGCAAAAAGGGTTTAATCCAAATGTTGCAACATTGACCATACTAATCAATTCATTCTGCAAAATGGGTCAATTGCAGAATACCTTTCAAG TTTTTGAGGTCATGGACAGGATTGGGTGCAAGCCAAACATTCAAACATACAATTGCTTGTTAAAGGGGATGTGTTATGTGGGGAGAATAGAGGAAGCATT CGAGCTAATGGAAGATATCAAGAAAACCACTGTAGAGCCGGATATTTATACATATACTGCCATGATGGATGGCTTTTGTAAGGTAGGCAGATCAGATGAG GCAATGGAGTTGCTAAATGAGGCTATGGAGATGGGGTTGGCACCAAATGTGGTCACTTTTAACACCCTGTTAGATGGATATGCCAAGGAAGGGAGACCAT TGAAAGGGTTTGGTGTGCTGAAGTTAATGAAACAGAGAAAATGCATGCCTGATTATATTAGCTACAGCACATTGCTGCATGGTTTGTTGCTCTGGGGAAA AGTTCTAGCCGGGTTGAGAATTTTCAATGAAATGGAGGGGAGTGGACTTGAAGCGGATGAGAGGTTGATGAATAGTCTTGTTAGAGGTTTATGTAGGAAA TCTATTAAAGAAAATGACCTAGTTGAGGTTGCCTATGAAGTGTTCGAGAAAATGAAGAAACGGGGTTTTGTCATAGAGCAGAGCACATATGCCTTAGTGA TTCAAGCTCTTTGGGTGGCTAAGAAAGTTGACGATGCTTTTATCAATTTGCACCAGATGGTTAGATTGGGATATATTCCTAGATTAATCACCATTAACAA CGTAATTCGAGCACTTTGTGTCGGAGGAAAGGTAGACAAGGCATTTTATGTTCTAGTTCTCATGTATGAAAATAGTAAAATCCCAAGTAGAATGTCCTAT GACTTACTGATTCATGAGTTGAATCGGCAGGAAAGGACTTTGGGCGCATGTAATGTCTATGGTGCTGCATTAGTTCGAGGTGTGGTTCCCCACAAAAAGC CTCGACGATGA
AA sequence Show only first row Show all	>Potri.016G136700.1 pacid=42809467 polypeptide=Potri.016G136700.1.p locus=Potri.016G136700 ID=Potri.016G136700.1.v4.1 annot-version=v4.1 MMSMSLPSPCSPLSEFLPSPSLSNHPVFFNNTSKLCCHKFSSLKLVFIPAASLSTTKSYPTETTVLHSPILGNKEQRLYPKEGEEHKGLPMKEEEQESLD FDEKASKFQVLDLLNAVKALPCKERVDYIVRVLDKEIGFFNISDFNDVLMALVTANESDLVLKLYSGLSCYSLEPNSWTFSIMVRCHCKKKDPGEAKRVL DQMMQKGFNPNVATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCYVGRIEEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDE AMELLNEAMEMGLAPNVVTFNTLLDGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLLHGLLLWGKVLAGLRIFNEMEGSGLEADERLMNSLVRGLCRK SIKENDLVEVAYEVFEKMKKRGFVIEQSTYALVIQALWVAKKVDDAFINLHQMVRLGYIPRLITINNVIRALCVGGKVDKAFYVLVLMYENSKIPSRMSY DLLIHELNRQERTLGACNVYGAALVRGVVPHKKPRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62680			Pentatricopeptide repeat (PPR)...		Potri.016G136700 [exp]	0	1
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Potri.001G358400 [exp]	1.00	0.9723
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.001G111800 [exp]	3.87	0.9485
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Potri.013G094500 [exp]	5.47	0.9583
AT3G06200			P-loop containing nucleoside t...		Potri.010G029400 [exp]	5.65	0.9544
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.015G086500 [exp]	6.16	0.9663	CTRNP.1
AT5G24690			Protein of unknown function (D...		Potri.003G019600 [exp]	6.78	0.9458
AT3G06200			P-loop containing nucleoside t...		Potri.008G200600 [exp]	9.79	0.9483
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.016G072200 [exp]	9.79	0.9624
AT3G22150			Tetratricopeptide repeat (TPR)...		Potri.006G007800 [exp]	11.00	0.9531
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.003G058300 [exp]	11.22	0.9459

Compare expression of checked genes

Potri.016G136700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.