Plant FIBer expression Database

Potri.016G136800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025225
[exp]
93 / 1e-24 ND /
Lus10025141
[exp]
92 / 7e-24 ND /
Lus10014171
[exp]
71 / 1e-16 ND /
PFAM info
Representative CDS sequence
>Potri.016G136800.2 pacid=42809214 polypeptide=Potri.016G136800.2.p locus=Potri.016G136800 ID=Potri.016G136800.2.v4.1 annot-version=v4.1
ATGACCCCATCTATAAACCTAAGTAAGTTCTCCCATGTCTCATTAGCGAGTGAAAGCAAAAAAGAAATGGACGAGATAGCGGTGGTTCTCAAAAGATTTG
GGGATGAGCAAAGCACATTGTTAGACCAGTTTGAGAGACTCTCCTTTGAGGTGCAGCTGAACCAAGCCATACTGGGGAGGAGTCTCTCGGAGCCAGGTGC
GTCTCGGTCTCAGCTCAAGGGAAAACTAAATGGGCAGGATACAGCTCCTCTGGCAACACATGTGAAGCAAGGGTGCCGTCGTCGTGGGTTAGGTTTTGAC
AAGCTCCTGAAGAAGTTGCTCAGGCCCATTCTTGGTAGAAAGGGTAAAGGTGATGGCGGTGGTGGTGGTGCTGCTGCTGCTGCAAAAAAGGAAGGCATGG
CTAATCCTAAAGATCCCAAATCTTGGAAGGCTTTTAGTAGGTCATTAAGGATTTAA
AA sequence
>Potri.016G136800.2 pacid=42809214 polypeptide=Potri.016G136800.2.p locus=Potri.016G136800 ID=Potri.016G136800.2.v4.1 annot-version=v4.1
MTPSINLSKFSHVSLASESKKEMDEIAVVLKRFGDEQSTLLDQFERLSFEVQLNQAILGRSLSEPGASRSQLKGKLNGQDTAPLATHVKQGCRRRGLGFD
KLLKKLLRPILGRKGKGDGGGGGAAAAAKKEGMANPKDPKSWKAFSRSLRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G136800
[exp]
0 1
AT1G53035 unknown protein Potri.013G130100
[exp]
1.73 0.9845
AT2G37925 COPT4 copper transporter 4 (.1) Potri.006G093300
[exp]
2.82 0.9857
AT5G51160 Ankyrin repeat family protein ... Potri.014G050600
[exp]
2.82 0.9796
AT5G41470 Nuclear transport factor 2 (NT... Potri.002G070800
[exp]
3.00 0.9862
Potri.014G093600
[exp]
3.00 0.9790
AT2G16050 Cysteine/Histidine-rich C1 dom... Potri.004G209200
[exp]
5.47 0.9819
AT1G63310 unknown protein Potri.001G452900
[exp]
7.21 0.9840
AT1G77700 Pathogenesis-related thaumatin... Potri.001G210400
[exp]
8.36 0.9807
AT5G35740 Carbohydrate-binding X8 domain... Potri.006G016800
[exp]
8.48 0.9812
Potri.001G381100
[exp]
9.00 0.9607

Potri.016G136800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.