Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56370 1116 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G01890 1113 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G28040 710 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 419 / 1e-129 Leucine-rich receptor-like protein kinase family protein (.1) AT1G62950 413 / 1e-129 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 407 / 2e-126 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 406 / 1e-125 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 404 / 1e-124 Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 400 / 5e-124 ERL1 ERECTA-like 1 (.1.2) AT5G63930 403 / 1e-123 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G108600 [exp] 1612 / 0 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 1196 / 0 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 1171 / 0 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G147300 [exp] 731 / 0 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G233600 [exp] 700 / 0 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G117500 [exp] 465 / 3e-149 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G114500 [exp] 456 / 1e-145 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 429 / 1e-133 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 425 / 8e-133 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014174 [exp] 1173 / 0 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10022738 [exp] 1166 / 0 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10012877 [exp] 1063 / 0 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 1046 / 0 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025223 [exp] 983 / 0 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 977 / 0 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035687 [exp] 577 / 0 AT3G28040 1021 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10037276 [exp] 576 / 0 AT3G28040 1013 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10006675 [exp] 443 / 8e-141 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031689 [exp] 404 / 1e-124 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G137000.1 pacid=42809737 polypeptide=Potri.016G137000.1.p locus=Potri.016G137000 ID=Potri.016G137000.1.v4.1 annot-version=v4.1 ATGCTGCTCAAGTTCTTATTTTTAGCTGTTTTAGCTCCACTACTTCTGGTACAGTGTTTGGACTCAATCAATGATGATGTACTTGGCTTGATAGTATTCA AGGCGGGTCTTCAAGACCCAGAGTCTAAACTCTCATCATGGAATGAAGATGATGACAGTCCTTGTAACTGGGTTGGTGTCAAATGTGACCCGAATACCCA TCGGGTCACTGAACTGGTTCTTGATGGCTTCTCTTTATCTGGGCACATTGGTCGTGGCCTTTTGAGGCTACAATTTCTTCAGGTTTTGTCTTTGGCTAAT AATAACTTTAATGGGACTATAAACCCTGATCTTCCTAGACTTGGCGGCTTACAAGTTATTGACTTGAGTGAAAATGGTCTATCAGGGTCAATCCCCGATG GGTTTTTCCAGCAATGTGGGTCATTGAGGTCTGTTTCATTTGCTAGGAATGATCTTACAGGGATGATTCCTGGTTCTTTGAGCTTTTGTATGTCGCTTTC AGTTGTTAATTTCTCATCGAATGGCCTTTCTGGTGAATTGCCATCTGGATTATGGTATTTGAGAGGGCTACAGTCTCTTGATTTGTCTGATAATTTGTTG GAAGGAGAGATTCCTGAAGGAATTGCAAATTTGTATGCTTTGAGAGCCATTAATTTGAGAAGGAATAGGTTCACTGGGCAGCTACCAGTGGATATTGGAG GTTGCCAGGTTTTGAAACTGCTTGATTTTAGCGAGAATGCTTTGTCTGGTGGTCTTCCAGAGTCATTGCAGAGGCTTAGTTCATGTGCTACTGTTAGACT AGGAGGAAATTCATTTACAGGGGAAGTTCCTGGGTGGATTGGGGAGTTGACAAGTCTTGAAAGCTTGGATCTTTCTGTCAATAGACTTTCAGGTCGGATT CCAGTTTCAATAGGAAACCTTAACGTGTTGAAGGAATTGAATCTGTCCATGAACCAGCTTACTGGAGGATTGCCTGAGTCAATGGCGAATTGTGTTAACC TTTTGGCTATAGATGTTAGCCATAATCGGTTGACAGGTAATCTTCCTTCATGGATTTTCAAGACAGGGTTAAAAAGTGTGTCGCTTTCTGGGAACAAACT TGATGAAAGCATAGAACATCCTTCAGGTGTATCTTTGGCAGCTTCTCTTGAAAGTCTTCAGGTCTTGGATCTATCTTCAAATGTCTTCTCTGGAGAAATC CCATCTGACATTGGGGTTTTAAGCAGCCTGCAACTCTTTAATGTGTCAAGGAACCAACTGTTTGGTTCTATTCCACCGAGTGTAGGAGAATTGACAATGA TACAAGCTCTGGATTTGAGTGATAATAGGCTAACCGGAAGCATTCCTTCCGAAATTGGAGGAGCAGTCTCCCTCAAGGAACTGAGATTGGAGATGAACTT CCTAACTGGGAAAATTCCTACTCAGATCAAGAAGTGCTCATCTCTAACATCTTTAATTATATCTGGGAACAACCTTAGTGGTCCAATTCCAGTAGCCATT GCAAACCTAACCAACCTACAATATGTAGATTTATCATTCAACCGCTTCTCTGGAAGCTTACCCAAGGAGCTGGCCAATCTTTCCCACCTCCTGTCCTTTA ATATTTCTCATAACAACTTAAAAGGTGATCTCCCACTTGGGGGTTTCTTCAACACTATTTCCCCATCATCTGTCTCTCGTAATCCCTCCTTGTGTGGATC TGTTGTCAACCGATCCTGCCCTTCTGTCCATCAGAAGCCTATTGTTCTGAATCCCAACTCTTCTGGCTCCTCCAATGGCACCTCTTTTAATCTCCATCAC AGGAAGATTGCACTCAGCATCTCTGCTCTCATTGCTATTGGTGCAGCCGCTTGCATTACACTCGGTGTGGTAGCTGTTACTCTCCTCAATATCCGTGCAA GATCTTCTATGGCGCGCTCTCCTGCTGCTTTCACATTTTCTGGTGGGGAAGATTTCAGCTGTTCCCCAACTAATGATCCAAACTATGGCAAGCTTGTCAT GTTTTCTGGTGATGCTGATTTTGTTGCTGGGGCCCAAGCATTACTCAACAAAGACTCAGAACTCGGTCGTGGTGGGTTTGGGGTTGTTTACCGAACAATA CTTCGAGATGGGCGTTCAGTTGCTATAAAGAAGCTAACAGTTTCAAGTTTGATCAAGTCCCAAGATGAATTTGAAAGGGAAGTGAAGAAACTTGGAGAGG TTAGGCATCATAATCTTGTCACACTGGAAGGTTATTACTGGACTCCATCCTTACAACTCCTTATTTATGAATACGTATCCAGTGGAAGTTTGTATAAGCA TCTCCATGATGGACCTGATAAGAACTACCTCTCCTGGCGGCATAGATTCAACATAATACTTGGAATGGCTAGAGGTTTGGCCCATTTGCATCACATGAAC ATAACCCATTACAATTTAAAATCTACCAATATTCTGATAGATGATTCTGGGGAGCCAAAAGTGGGAGACTTTGGCCTGGCGAAGCTGTTGCCCACTTTAG ACCGTTGCATCTTAAGCAGCAAAATCCAGAGTGCATTAGGATACATGGCTCCCGAGTTTGCCTGTCGAACGGTGAAGATAACTGAGAAATGTGATGTGTA TGGGTTTGGGGTCCTAGTTTTGGAAGTGGTGACAGGGAAGAGGCCAGTGGAATACATGGAGGATGATGTGGTTGTGCTATGTGACATGGTGAGGGGAGCA CTGGAGGATGGAAGAGTGGAAGAATGCATTGATGGCAGACTTCGAGGAAATTTTCCAGCAGATGAGGCGATTCCAGTAGTAAAACTTGGTTTGATATGTT CATCTCAAGTGCCATCGAATCGGCCAGACATGGAAGAAGTGGTCAATATTTTAGAGCTGATCCAATGTCCTGCAGGGGGGCAGGAAGAGCTGGAGTGA
AA sequence Show only first row Show all	>Potri.016G137000.1 pacid=42809737 polypeptide=Potri.016G137000.1.p locus=Potri.016G137000 ID=Potri.016G137000.1.v4.1 annot-version=v4.1 MLLKFLFLAVLAPLLLVQCLDSINDDVLGLIVFKAGLQDPESKLSSWNEDDDSPCNWVGVKCDPNTHRVTELVLDGFSLSGHIGRGLLRLQFLQVLSLAN NNFNGTINPDLPRLGGLQVIDLSENGLSGSIPDGFFQQCGSLRSVSFARNDLTGMIPGSLSFCMSLSVVNFSSNGLSGELPSGLWYLRGLQSLDLSDNLL EGEIPEGIANLYALRAINLRRNRFTGQLPVDIGGCQVLKLLDFSENALSGGLPESLQRLSSCATVRLGGNSFTGEVPGWIGELTSLESLDLSVNRLSGRI PVSIGNLNVLKELNLSMNQLTGGLPESMANCVNLLAIDVSHNRLTGNLPSWIFKTGLKSVSLSGNKLDESIEHPSGVSLAASLESLQVLDLSSNVFSGEI PSDIGVLSSLQLFNVSRNQLFGSIPPSVGELTMIQALDLSDNRLTGSIPSEIGGAVSLKELRLEMNFLTGKIPTQIKKCSSLTSLIISGNNLSGPIPVAI ANLTNLQYVDLSFNRFSGSLPKELANLSHLLSFNISHNNLKGDLPLGGFFNTISPSSVSRNPSLCGSVVNRSCPSVHQKPIVLNPNSSGSSNGTSFNLHH RKIALSISALIAIGAAACITLGVVAVTLLNIRARSSMARSPAAFTFSGGEDFSCSPTNDPNYGKLVMFSGDADFVAGAQALLNKDSELGRGGFGVVYRTI LRDGRSVAIKKLTVSSLIKSQDEFEREVKKLGEVRHHNLVTLEGYYWTPSLQLLIYEYVSSGSLYKHLHDGPDKNYLSWRHRFNIILGMARGLAHLHHMN ITHYNLKSTNILIDDSGEPKVGDFGLAKLLPTLDRCILSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGA LEDGRVEECIDGRLRGNFPADEAIPVVKLGLICSSQVPSNRPDMEEVVNILELIQCPAGGQEELE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56370			Leucine-rich repeat protein ki...		Potri.016G137000 [exp]	0	1
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.005G001600 [exp]	1.00	0.9421	MYB61.2
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252000 [exp]	1.41	0.9414
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.004G049100 [exp]	1.73	0.9391
AT1G32860			Glycosyl hydrolase superfamily...		Potri.001G449100 [exp]	2.82	0.9291
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	3.87	0.9285
AT2G45340			Leucine-rich repeat protein ki...		Potri.002G147000 [exp]	4.89	0.9243
AT1G67910			unknown protein		Potri.010G046700 [exp]	5.29	0.9070
AT1G14185			Glucose-methanol-choline (GMC)...		Potri.010G168100 [exp]	6.78	0.8927
AT5G62710			Leucine-rich repeat protein ki...		Potri.012G071100 [exp]	8.83	0.9199
AT5G40250			RING/U-box superfamily protein...		Potri.012G078200 [exp]	9.11	0.8828

Compare expression of checked genes

Potri.016G137000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.