Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38550 263 / 3e-86 Transmembrane proteins 14C (.1) AT3G57280 51 / 3e-07 Transmembrane proteins 14C (.1) AT3G20510 44 / 2e-05 Transmembrane proteins 14C (.1) AT1G50740 42 / 5e-05 Transmembrane proteins 14C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G108700 [exp] 509 / 0 AT2G38550 275 / 7e-91 Transmembrane proteins 14C (.1) Potri.011G138100 [exp] 40 / 0.0003 AT1G50740 128 / 1e-39 Transmembrane proteins 14C (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025137 [exp] 197 / 1e-60 AT2G38550 207 / 5e-65 Transmembrane proteins 14C (.1) Lus10025221 [exp] 177 / 2e-53 AT2G38550 203 / 2e-63 Transmembrane proteins 14C (.1) Lus10008541 [exp] 46 / 4e-06 AT1G50740 178 / 3e-59 Transmembrane proteins 14C (.1) Lus10019624 [exp] 45 / 1e-05 AT1G50740 177 / 8e-59 Transmembrane proteins 14C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03647 [poplar] [flax] Tmemb_14 Transmembrane proteins 14C
Representative CDS sequence Show only first row Show all	>Potri.016G137200.1 pacid=42810299 polypeptide=Potri.016G137200.1.p locus=Potri.016G137200 ID=Potri.016G137200.1.v4.1 annot-version=v4.1 ATGAGTGTGTCAATGGAGTTGTTATCTGCTGGCTGTAGTTCTTTGCTAACAAAAAGGCCATCTTTTTGTTCATCTTCTTCAATGGCTTTGTTTGCTCCAT CCTTAAAGTTTCGATCTCTATTGCTTAAACCTAGCGGTCACAGGTTGTCTTTTGAGTCTCCAAGGGCTTTTGTCCCAAAAGGGCTTGGTGTTGGTGTTGG TTTTCGTTCTGGGAATTCGTTGAACCGACAAATTGTGGTATTTGCTGGCTCTCACGAGGATTCTGAGCATTCAGAGATTGAAGTGGAAAAGGAAAGTCAA GATAAAAAATTAGAGGGTGAAGAATCAGAGGAAGTATGGAAGCAGACACTAGAATCTTTCAAAGAACAAGCTTTAAGGTTGCAAAGTGTTTCTCAAGAAG CATATGAGATATACTCAGAGAAAGCCATGGTTATTTTGGAAGAAACTTCAGAGAAGTTAAAGATTCAAGCAGTGAAGGCAAAGAAGGATTTGGGTGAGCT AGCAAAGGAACTTGGTGAAGATAGTATAGAGTATCTTGTAGCAGCTACAGAGAATTCTCCAGAACCAGTGAAGGAGGTTGTGGAAACGTTATCTTCTTCG ACCGATGATTTTAATGATATTTCTAAAGTTCGTGATTTCCAAGTTGGAATACCATATGGTTTATTACTTGCCACTGCTGGATTTCTCTCCTTCATGCTGT CGGGCAGCATCAATTCCATTAGGTTTGGTGTCATTCTTGGCGGTGCACTTCTGGCTTTAAGCGTATCAAGTTTAAAATCTTACAAAAGAGGAGAGCCAGA TTCCTTGGCCTTGAAAGGACAGGCAGCAATAGTGGCTATAATCTTTCTTAGGGACATTAGAATCATAATGACTCGGGGAGGTTCATTTTTTACTCCTGTT GCAACCCTCATCAGTGGTGCAGTGGTTGCATTCTATCTATATAAGATCGCCGTGGGTGGTAAGCAGAGTAAGGGGTCAGACATGGGACATGGAGCAGAAA ATTGA
AA sequence Show only first row Show all	>Potri.016G137200.1 pacid=42810299 polypeptide=Potri.016G137200.1.p locus=Potri.016G137200 ID=Potri.016G137200.1.v4.1 annot-version=v4.1 MSVSMELLSAGCSSLLTKRPSFCSSSSMALFAPSLKFRSLLLKPSGHRLSFESPRAFVPKGLGVGVGFRSGNSLNRQIVVFAGSHEDSEHSEIEVEKESQ DKKLEGEESEEVWKQTLESFKEQALRLQSVSQEAYEIYSEKAMVILEETSEKLKIQAVKAKKDLGELAKELGEDSIEYLVAATENSPEPVKEVVETLSSS TDDFNDISKVRDFQVGIPYGLLLATAGFLSFMLSGSINSIRFGVILGGALLALSVSSLKSYKRGEPDSLALKGQAAIVAIIFLRDIRIIMTRGGSFFTPV ATLISGAVVAFYLYKIAVGGKQSKGSDMGHGAEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38550			Transmembrane proteins 14C (.1...		Potri.016G137200 [exp]	0	1
AT1G68300			Adenine nucleotide alpha hydro...		Potri.010G123400 [exp]	4.00	0.8214
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Potri.018G069800 [exp]	6.70	0.7729
AT2G28270			Cysteine/Histidine-rich C1 dom...		Potri.001G229900 [exp]	7.74	0.7820
					Potri.003G018400 [exp]	8.71	0.8205
AT4G22150		PUX3	plant UBX domain-containing pr...		Potri.004G004200 [exp]	9.48	0.7609
AT5G18290		SIP1B, SIP1;2	SMALL AND BASIC INTRINSIC PROT...		Potri.014G154400 [exp]	10.39	0.8071
AT5G02570			Histone superfamily protein (....		Potri.017G123700 [exp]	11.53	0.7871	HTB903
AT4G26840		ATSUMO1, SUMO1,...	ARABIDOPSIS THALIANA SMALL UBI...		Potri.002G224700 [exp]	12.00	0.7841	Pt-SUM1.1
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Potri.015G055300 [exp]	12.24	0.7935
AT1G02780		EMB2386	embryo defective 2386, Ribosom...		Potri.004G078000 [exp]	12.84	0.7820	Pt-RPL19.3

Compare expression of checked genes

Potri.016G137200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.