Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52850 984 / 0 VSR1;1, GFS1, BP80-1;1, ATVSR1, VSR-1, VSR1, BP80B, BP-80, BP80, ATELP1 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) AT2G30290 944 / 0 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT2G14740 927 / 0 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) AT2G14720 922 / 0 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT1G30900 774 / 0 VSR6, VSR3;3, BP80-3;3 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) AT4G20110 772 / 0 VSR7, VSR3;1, BP80-3;1 VACUOLAR SORTING RECEPTOR 3;1, binding protein of 80 kDa 3;1, VACUOLAR SORTING RECEPTOR 7 (.1.2) AT2G34940 724 / 0 VSR5, VSR3;2, BP80-3;2 VACUOLAR SORTING RECEPTOR 3;2, binding protein of 80 kDa 3;2, VACUOLAR SORTING RECEPTOR 5 (.1) AT2G43070 51 / 2e-06 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G63690 51 / 2e-06 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT1G21270 43 / 0.0005 WAK2 wall-associated kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G108800 [exp] 1177 / 0 AT3G52850 1026 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.001G294400 [exp] 936 / 0 AT2G14740 1100 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.009G088900 [exp] 933 / 0 AT2G14740 1089 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.003G155200 [exp] 791 / 0 AT1G30900 924 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.001G075600 [exp] 780 / 0 AT1G30900 911 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.016G137350 [exp] 278 / 4e-91 AT3G52850 212 / 2e-66 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155300 [exp] 67 / 4e-13 AT1G30900 86 / 1e-20 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.014G150000 [exp] 57 / 2e-08 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.002G232200 [exp] 55 / 1e-07 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022737 [exp] 1027 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10014176 [exp] 1019 / 0 AT3G52850 980 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025136 [exp] 1019 / 0 AT3G52850 959 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10020967 [exp] 922 / 0 AT2G14740 1077 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10012366 [exp] 904 / 0 AT2G14740 1055 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10002130 [exp] 875 / 0 AT2G14740 1025 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10025220 [exp] 822 / 0 AT3G52850 754 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10006944 [exp] 769 / 0 AT1G30900 926 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Lus10025361 [exp] 398 / 5e-133 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10019557 [exp] 53 / 3e-07 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain
Representative CDS sequence Show only first row Show all	>Potri.016G137300.3 pacid=42810106 polypeptide=Potri.016G137300.3.p locus=Potri.016G137300 ID=Potri.016G137300.3.v4.1 annot-version=v4.1 ATGAGGGAAAAGTTAGGATTTTTGGTTTGTGTATGGTTTTTGCTATGTGGGTTTTGTTTTGGTAGGTTTGTAGTAGAGAAAAACAGCTTGAAACTAACAT CACCTGAGTCATTGAAAGGTGTTTATGAATGTGCGATTGGTAATTTCGGAGTTCCTCAATATGGAGGAACTTTAGTTGGTACTGTGGTTTATCCAAAAGC TAATCAAAAGGCATGCAAAGGGTTTGATGAGGTTGGCATCTCTTTCAAATCTAGGCCTGGAGGGTTACCTACTTTTGTCCTTGCTGATCGTGGAGATTGT TACTTTACCTTGAAGGCATGGAATGCACAGAACGGTGGAGCAGCAGCTATTCTTGTAGCAGATGACAAGGTTGAACCACTGATTACCATGGACAACCCTG AAGAAGATGATGCCGGTGCTGCATATCTGCAGAACATCACTATCCCCTCAGCACTTATTAGCAAGTCCTTGGGGGACAGTATCAAGAAAGCTCTATCTAA TGGAGAGATGGTTAACATGAATCTTGATTGGACAGAGTCTCTTCCACATCCTGATGAACGGGTTGAGTACGAGTTCTGGACAAATAGCAATGATGAGTGC GGGCCAAAATGTGACAGTCAGATTGAGTTTGTCAAGAACTTCAAAGGTGCAGCTCAGATACTCGAGCGGAAGGGTTACACACAGTTCACCCCTCACTACA TAACATGGTATTGCCCAGAGGCATTCATTCTGAGCAAACAATGCAAATCCCAGTGCATCAACCATGGGAGGTACTGTGCTCCAGATCCTGAGCAGGATTT TAGCAAAGGGTATGATGGAAAAGATGTTGTAGTACAGAATCTACGCCAAGCTTGCTTTTATAAAGTGGCCAGTGAAAGTAAAAAGCCATGGCTTTGGTGG GACTATGTGACTGATTTTTCAATCCGTTGCCCAATGAAGGACAAGAAATACACCAAAGAGTGTGCAGATCAAGTTATCCAATCCCTTGGTGTTGATCTTG AGAAGATAGATAAATGCATAGGAGAACCTGAGGCAGATGTGGAAAACGAAGTTCTTAAAGCTGAACAAGATACACAGATCGGAAAAGGGTCTCGAGGAGA TGTGACTATACTTCCAACTCTTGTAATAAACAACAGGCAATATAGAGGTAAGTTGGACAAAGGAGCAGTTCTTAAGGCGATATGTGCAGGTTTTGAAGAG ACCACGGAGCCAGCCATATGCTTAAGTGAAGATGTAGAAACCAACGAGTGTCTAGAAAACAATGGTGGGTGCTGGCAGGACAAGGCTGCTAACCTTACTG CATGCAAGGATACTTTTCGGGGTAGAGTATGTGAATGTCCTGTGGTTCAGGGGGTGAAGTTTGTTGGTGATGGTTATACTCGCTGTGAAGCTTCGGGTTC TTTACGTTGTGAAATTAACAATGGAGGATGCTGGAAGAAAACTCAAGATGGCAGGACCTTTTCTGCTTGTGTTGAAGATCATTCTCAAGGTTGCAAGTGT CCTCCGGGATTCAAGGGTGATGGAGTAAATTCCTGTGAAGATGTGGATGAATGCAAAGACAAGCTGGCCTGCCAGTGTTCAGAATGCAAATGCAAAAATA CCTGGGGCAGTTATGACTGCAGCTGCGGTGGTGGTTTATTGTATATGCAAGAACATGACACGTGCATAAGTAAAGCTGCCAACACAAATTACAGCTGGAG CTTTGTTTGGATTATTATTCTTGGCTTGGCTGCTGCTGGTGTTGCTGGATATGCAATTTACAAGTACAGAATCCGGAGATACATGGATTCAGAGATACGG GCTATCATGGCACAGTATATGCCATTGGATAGTCAAGCAGACATCCCTGTTCATCATGCTCCCCGTGGGGACATCTGA
AA sequence Show only first row Show all	>Potri.016G137300.3 pacid=42810106 polypeptide=Potri.016G137300.3.p locus=Potri.016G137300 ID=Potri.016G137300.3.v4.1 annot-version=v4.1 MREKLGFLVCVWFLLCGFCFGRFVVEKNSLKLTSPESLKGVYECAIGNFGVPQYGGTLVGTVVYPKANQKACKGFDEVGISFKSRPGGLPTFVLADRGDC YFTLKAWNAQNGGAAAILVADDKVEPLITMDNPEEDDAGAAYLQNITIPSALISKSLGDSIKKALSNGEMVNMNLDWTESLPHPDERVEYEFWTNSNDEC GPKCDSQIEFVKNFKGAAQILERKGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSKGYDGKDVVVQNLRQACFYKVASESKKPWLWW DYVTDFSIRCPMKDKKYTKECADQVIQSLGVDLEKIDKCIGEPEADVENEVLKAEQDTQIGKGSRGDVTILPTLVINNRQYRGKLDKGAVLKAICAGFEE TTEPAICLSEDVETNECLENNGGCWQDKAANLTACKDTFRGRVCECPVVQGVKFVGDGYTRCEASGSLRCEINNGGCWKKTQDGRTFSACVEDHSQGCKC PPGFKGDGVNSCEDVDECKDKLACQCSECKCKNTWGSYDCSCGGGLLYMQEHDTCISKAANTNYSWSFVWIIILGLAAAGVAGYAIYKYRIRRYMDSEIR AIMAQYMPLDSQADIPVHHAPRGDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.016G137300 [exp]	0	1
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.016G137350 [exp]	1.00	0.9248
AT1G47710			Serine protease inhibitor (SER...		Potri.014G036000 [exp]	2.00	0.8679
AT2G39130			Transmembrane amino acid trans...		Potri.010G226000 [exp]	3.00	0.8195
AT5G67265			unknown protein		Potri.002G122800 [exp]	3.87	0.8545
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G246000 [exp]	7.34	0.8078
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G179900 [exp]	8.12	0.8364
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Potri.014G097100 [exp]	8.48	0.8181
AT2G35790			unknown protein		Potri.008G042800 [exp]	10.00	0.8465
AT1G07985			Expressed protein (.1)		Potri.001G266500 [exp]	10.95	0.7793
AT1G43910			P-loop containing nucleoside t...		Potri.007G019600 [exp]	11.66	0.8486

Compare expression of checked genes

Potri.016G137300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.