Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48310 366 / 5e-123 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G26320 362 / 3e-121 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G48270 362 / 3e-121 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G26330 360 / 1e-120 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26300 360 / 2e-120 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G57260 360 / 2e-120 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G48280 355 / 9e-119 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48290 352 / 1e-117 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT3G26310 352 / 2e-117 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G48300 348 / 3e-116 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G137600 [exp] 852 / 0 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.015G085600 [exp] 505 / 3e-177 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089600 [exp] 489 / 5e-171 AT3G48310 387 / 6e-130 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Potri.015G085800 [exp] 404 / 3e-137 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.012G089900 [exp] 392 / 4e-133 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.012G090000 [exp] 388 / 2e-131 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.015G086000 [exp] 385 / 2e-130 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.002G025300 [exp] 379 / 7e-128 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 375 / 2e-126 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029787 [exp] 448 / 4e-155 AT3G48310 407 / 7e-138 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) Lus10019459 [exp] 447 / 3e-154 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10016601 [exp] 387 / 1e-130 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10017961 [exp] 386 / 2e-130 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043313 [exp] 386 / 2e-130 AT3G48280 390 / 3e-131 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030708 [exp] 382 / 6e-129 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10030924 [exp] 378 / 4e-127 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10024315 [exp] 376 / 1e-126 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10029035 [exp] 371 / 2e-124 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10013194 [exp] 370 / 2e-124 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.016G137400.2 pacid=42809646 polypeptide=Potri.016G137400.2.p locus=Potri.016G137400 ID=Potri.016G137400.2.v4.1 annot-version=v4.1 ATGCTTTTGCGCATGGGGCATGTTCCAACTCTCATCGTTTCATCTGCCGAGGCAGCTAGTGAAATTATGAAGACCCATGATATTGTTTTCGCAAACCGAC CCCAAACCACAGCTGCAAGTATCTTTTTTCATGGTTGTGTAGATGTTGGTTTTGCTCCTTTTGGTGAGTACTGGAGAAAAGTCAAGAAGATTAGTGTTCA AGAACTTTTGGGCCCGAAAACGGTGCAATCATTTCACCACGTAAGAGAAGAAGAAGCTGCAGGCTTGATTGATAAAATTCGTTTTGCTTGTCATAGTGGG ACTTCTGTTAATATAAGTGAGATGCTGATCTCTGTCTCAAGCGATATCGTTTCCAGATGTGTTCTGGGTCGGAAGGCCGACAAGGAAGGTGGCAACAGCA AGTTTGGAGAGTTGACGAGGACATTTATGGTTCAATTGACAGCATTTAGTTTTGGGGATTTATTCCCTTACTTGGGATGGATGGACACTCTCACAGGCTT GATCCCACGGTTGAAAGCAACTTCGAGGGCATTAGATTCCTTTCTTGATCAGGTGATTGAAGAGCATAGGAGTTTGGAAAGTGATGGTGACAGGTGTGCT CAGACTGATTTTCTGCAAGCTCTCCTCCAACTTCAGAAGAATGGCAAGCTTGATGTGCAGCTCACACGAGACAATATCATAGCAGTTGTTTTGGACATGT TTGTGGGAGGAACTGATACAAGCTCGACAATGATGGAATGGGCGATTGCAGAGCTTGTAAGGAATCAAACTATCATGAGGAAAGCCCAAGAAGAGGTCAG GAGAATAGTAGGGAAGAAATCGAAGGTAGAAGCAAATGATATAGAAGAGATGGGATATTTGAAATGTATCATCAAAGAGACTCTCAGGCTTCATCCCGCT GCCCCTCTGCTGGTTCCTAGAGAAACATCAGCAAGTTTTGAATTGGGAGGCTACTACATTCCTCCCAAGACAAGAGTTCTTGTGAACGCATTTGCCATTC AAAGGGACCCTAGCTTCTGGGACAGACCTGATGAGTTTCTCCCAGAAAGGTTTGAGAACAACCCAGTTGATTTCAAAGGCCAGGACTTTCAATTCATTCC ATTTGGTAGCGGGAGAAGGGGTTGCCCTGGGGCCCTATTTGGGGTCACTGCAGTTGAATTTATGATTGCCAATCTCCTATATTGGTTCGACTGGAGGTTG CCTGATGGCGCAACTCAAGAGGAATTGGACATGAGTGAGATCTGTGGAATGACTGCTTACAAGAAGACCCCTCTTCTTCTTGTACCTTCATTATACTCGC CCTGA
AA sequence Show only first row Show all	>Potri.016G137400.2 pacid=42809646 polypeptide=Potri.016G137400.2.p locus=Potri.016G137400 ID=Potri.016G137400.2.v4.1 annot-version=v4.1 MLLRMGHVPTLIVSSAEAASEIMKTHDIVFANRPQTTAASIFFHGCVDVGFAPFGEYWRKVKKISVQELLGPKTVQSFHHVREEEAAGLIDKIRFACHSG TSVNISEMLISVSSDIVSRCVLGRKADKEGGNSKFGELTRTFMVQLTAFSFGDLFPYLGWMDTLTGLIPRLKATSRALDSFLDQVIEEHRSLESDGDRCA QTDFLQALLQLQKNGKLDVQLTRDNIIAVVLDMFVGGTDTSSTMMEWAIAELVRNQTIMRKAQEEVRRIVGKKSKVEANDIEEMGYLKCIIKETLRLHPA APLLVPRETSASFELGGYYIPPKTRVLVNAFAIQRDPSFWDRPDEFLPERFENNPVDFKGQDFQFIPFGSGRRGCPGALFGVTAVEFMIANLLYWFDWRL PDGATQEELDMSEICGMTAYKKTPLLLVPSLYSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Potri.016G137400 [exp]	0	1
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.019G013300 [exp]	1.00	0.9662
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.016G137600 [exp]	3.16	0.9469	CYP71AN3
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Potri.006G139400 [exp]	4.89	0.9430
AT5G47710			Calcium-dependent lipid-bindin...		Potri.016G005300 [exp]	4.89	0.9412
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.001G062500 [exp]	5.91	0.9402
AT5G36930			Disease resistance protein (TI...		Potri.019G019053 [exp]	6.00	0.9165
AT2G24130			Leucine-rich receptor-like pro...		Potri.005G030519 [exp]	8.48	0.9190
AT5G36930			Disease resistance protein (TI...		Potri.019G007884 [exp]	10.24	0.9001
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.014G100900 [exp]	10.48	0.9178	DAG1.2
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Potri.003G081200 [exp]	10.58	0.9229

Compare expression of checked genes

Potri.016G137400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.