Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61670 683 / 0 Lung seven transmembrane receptor family protein (.1) AT1G72480 506 / 2e-176 Lung seven transmembrane receptor family protein (.1) AT2G01070 479 / 7e-166 Lung seven transmembrane receptor family protein (.1.2) AT1G10980 424 / 2e-144 Lung seven transmembrane receptor family protein (.1) AT3G09570 45 / 0.0001 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109000 [exp] 910 / 0 AT1G61670 691 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.003G068500 [exp] 537 / 0 AT1G72480 747 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G166500 [exp] 535 / 0 AT1G72480 738 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G209400 [exp] 439 / 3e-150 AT2G01070 650 / 0.0 Lung seven transmembrane receptor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030521 [exp] 638 / 0 AT1G61670 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10012872 [exp] 634 / 0 AT1G61670 604 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10008125 [exp] 520 / 0 AT1G72480 719 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10013162 [exp] 518 / 0 AT1G72480 715 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10036166 [exp] 509 / 2e-177 AT2G01070 679 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10005732 [exp] 502 / 2e-174 AT2G01070 678 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10025135 [exp] 466 / 5e-162 AT1G61670 441 / 4e-152 Lung seven transmembrane receptor family protein (.1) Lus10025219 [exp] 334 / 2e-113 AT1G61670 308 / 6e-104 Lung seven transmembrane receptor family protein (.1) Lus10025218 [exp] 313 / 1e-104 AT1G61670 303 / 2e-101 Lung seven transmembrane receptor family protein (.1) Lus10025283 [exp] 45 / 0.0001 AT5G18520 697 / 0.0 Lung seven transmembrane receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [poplar] [flax] GPCR_A PF06814 [poplar] [flax] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Potri.016G137700.1 pacid=42810643 polypeptide=Potri.016G137700.1.p locus=Potri.016G137700 ID=Potri.016G137700.1.v4.1 annot-version=v4.1 ATGGAACGTGGAGAATTTCGGGGTGCAAAAGCTTGTGGTAAAGGGTTTCGGATAAGCTTACTGCTCTTCTTGTGCATGATCACAACACAAGTGAAGGGAT CGATTCATGAGTACAGAAACGAAGCTTTTACTACGAAGTCCAATGCCTTCTTTTTTCATGGTGGTAGCGAAGGTATTTATGCTTCTAAAGCTTCTCGTCA TCCTGATTCCTCTGCTCTCTCCCAATCAGGAAAATCCTTCATCAGGTTTGAAGGGGTGACGTTTAGGAGGACGAAAGAGTCAGCTAGTCGGCAAGAGGTT ATGCAGACGAGTACTGGAGTTGTTGAAGCAATCATACTTGATGTGAAAGATAGGGAGAGGATCGGAGGGGAGTTTTTGAAGACTAGTGCTATATGTTGTA ATCATACTCTTGCGGAGACGGGTTCTTGCAAGTTAGGGGAGGTGATTTTCAAGAAAAATTTGGATAATCCTAACTGGCCGCGTGTTATTAAGACGGACTT TGCAGGAACAATTGATGAAGCCAAATTGGAAGCTGATGAAATCGAGATAAACAGTAATGGAATGTATTACCTTTATTTTATGTTTTGTAATCCGGAATTG AAGGGGACAGTGATCAACGGGAGGACTGTGTGGAAGAACCCAAATGGTTATTTGCCCGGAAAGATGACTCCTTTGATGACATTCTTTGGAATTATGTCTT TAGCCTATCTTGTGCTAGGACTAGCATGGTTCGTAAGGTTTGTTCAATTTTGGAAGGATATTATACACTTGCATTACCACATTACGGCTGTTATTGCTCT TGGAATGTGCGAGATGGCTGTTTGGTATTTTGAATATGCCAATTTTAATTCGACTGGATTGAGACCAATGGGTATCACGTTGTGGGCTGTCACCTTTACC ACTGTGAAGAAGACTCTATCCCGCCTTCTTCTTTTGGTTGTCTCAATGGGTTTTGGTGTGGTTAGGCCAACCCTTGGTGGCATAACATCAAAAGTGCTTC TTCTTGGTTTGGTATATTTTATTGCTTCTGAGGCGCTTGAGCTCATTGAACATCTGGGAAACATCAATGACTTTTCCAAGAAAACAAAGGTGTTTGTGGT GCTTCCAGTTGTTTTCCTGGATTCCTGCTTTATTCTCTGGATTTTCTCATCGCTGTCAAAAACTTTAGAGAAGCTTCAGATGAGGAGAAACATGGCTAAG TTAGAACTGTACCGGAAGTTTACCAATGCCCTTGCAGTGTCTGTACTTCTCTCCATTGCCTGGATTGGTTTTGAGCTATACTTCAATGCTACTGATCCAC TAAGTGAGCTGTGGCAAGTTGCTTGGATCATCCCTGCTTTCTGGACTTTGCTAGCATACTCACTCTTGGTGGTGATATGTGTGCTCTGGGCTCCTTCACG TAACCCAACAAGATATGCATATTCAGAGGGGGAGGACTTTGACGAGGAGGGTATATCATTGACAACCGGTGATATTGCTAATAAGCTGGAAAGGAATGCA CTTGTTGAAGATCTTGAGGAGGATAAGCGAGAATAG
AA sequence Show only first row Show all	>Potri.016G137700.1 pacid=42810643 polypeptide=Potri.016G137700.1.p locus=Potri.016G137700 ID=Potri.016G137700.1.v4.1 annot-version=v4.1 MERGEFRGAKACGKGFRISLLLFLCMITTQVKGSIHEYRNEAFTTKSNAFFFHGGSEGIYASKASRHPDSSALSQSGKSFIRFEGVTFRRTKESASRQEV MQTSTGVVEAIILDVKDRERIGGEFLKTSAICCNHTLAETGSCKLGEVIFKKNLDNPNWPRVIKTDFAGTIDEAKLEADEIEINSNGMYYLYFMFCNPEL KGTVINGRTVWKNPNGYLPGKMTPLMTFFGIMSLAYLVLGLAWFVRFVQFWKDIIHLHYHITAVIALGMCEMAVWYFEYANFNSTGLRPMGITLWAVTFT TVKKTLSRLLLLVVSMGFGVVRPTLGGITSKVLLLGLVYFIASEALELIEHLGNINDFSKKTKVFVVLPVVFLDSCFILWIFSSLSKTLEKLQMRRNMAK LELYRKFTNALAVSVLLSIAWIGFELYFNATDPLSELWQVAWIIPAFWTLLAYSLLVVICVLWAPSRNPTRYAYSEGEDFDEEGISLTTGDIANKLERNA LVEDLEEDKRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61670			Lung seven transmembrane recep...		Potri.016G137700 [exp]	0	1
AT3G53850			Uncharacterised protein family...		Potri.010G198700 [exp]	1.73	0.8530
AT4G39740		HCC2	homologue of copper chaperone ...		Potri.007G091300 [exp]	3.87	0.8305
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Potri.007G025700 [exp]	6.48	0.8092
AT5G56020			Got1/Sft2-like vescicle transp...		Potri.011G164900 [exp]	9.00	0.8483
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Potri.014G128400 [exp]	9.38	0.7590
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Potri.010G174000 [exp]	16.67	0.7158	Pt-ALDH5.2
AT4G29340		PRF4	profilin 4 (.1)		Potri.018G057600 [exp]	17.43	0.8251	PRO1.3
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.015G055200 [exp]	17.66	0.8432
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.014G044000 [exp]	20.73	0.8490
AT2G32980			unknown protein		Potri.002G225100 [exp]	22.97	0.8281

Compare expression of checked genes

Potri.016G137700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.