Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01910 123 / 1e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109400 [exp] 288 / 7e-100 AT5G01910 96 / 6e-25 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025130 [exp] 161 / 5e-50 AT5G01910 105 / 1e-28 unknown protein Lus10025214 [exp] 160 / 2e-49 AT5G01910 104 / 2e-28 unknown protein Lus10022734 [exp] 157 / 2e-48 AT5G01910 109 / 5e-30 unknown protein Lus10014179 [exp] 152 / 2e-46 AT5G01910 115 / 3e-32 unknown protein Lus10035364 [exp] 58 / 3e-11 AT5G01910 44 / 1e-06 unknown protein Lus10001909 [exp] 46 / 9e-06 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10003904 [exp] 45 / 3e-05 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10032379 [exp] 40 / 0.0006 AT4G11080 481 / 1e-167 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G138300.1 pacid=42810085 polypeptide=Potri.016G138300.1.p locus=Potri.016G138300 ID=Potri.016G138300.1.v4.1 annot-version=v4.1 ATGCTTAAGTTCCAATCTCCACTCACCGGAGACAAGGACCTCCGGCCAAAATCTGGCCGGAAACCACTCCAACCAAAGAACTCACCGGCAACTCCAATGA CCCAGATTCAAATCTTGAAATCAAAGCAAGAGTGGACTGAGTTCTCAGTTGTTAAAGACTCCAACAAAGAGAACCATCCTATCTACACCACTACCCCAAC AAAACCCATCGTTGAGCCATTGGATTCTTCTCTGGCAGAAGAACTTAGTGCCATCAAGAAGAAGCTAGAGAGGTTGAGGTCGGACAAAGAGAGAACAGAG AAGATGCTTGAAGAGAGGGCAATGGTGCTGGATTTGCAAAAGAAGGAGCTGGAGCAGAGAGGGGAAGTTCAGAAGAGGCTAGAGATTGAAGTTGACAGAC TTTATAGATTGAAGGAACTACATTCCTACTCCATGCAGAGAATTTCACCAATTCGAACGCTGAGGGAGAAGGAACATGAAAAGAAGATGAGTGAAGCGCA ACCACTTGAAAAGGAAACCGAGGAATTGGAGGAATCATTGGGAGACAATGCAATGCAGAGTCCAAGTTCAAGTTGGGGTTCAGCAAATTCTGTTTCGTCT CAACTTGTTGCTGTGAAGTGA
AA sequence Show only first row Show all	>Potri.016G138300.1 pacid=42810085 polypeptide=Potri.016G138300.1.p locus=Potri.016G138300 ID=Potri.016G138300.1.v4.1 annot-version=v4.1 MLKFQSPLTGDKDLRPKSGRKPLQPKNSPATPMTQIQILKSKQEWTEFSVVKDSNKENHPIYTTTPTKPIVEPLDSSLAEELSAIKKKLERLRSDKERTE KMLEERAMVLDLQKKELEQRGEVQKRLEIEVDRLYRLKELHSYSMQRISPIRTLREKEHEKKMSEAQPLEKETEELEESLGDNAMQSPSSSWGSANSVSS QLVAVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01910			unknown protein		Potri.016G138300 [exp]	0	1
AT5G04320			Shugoshin C terminus (.1.2)		Potri.009G006100 [exp]	2.64	0.9760
AT3G42725			Putative membrane lipoprotein ...		Potri.018G065700 [exp]	3.00	0.9689
AT4G01730			DHHC-type zinc finger family p...		Potri.014G112000 [exp]	3.46	0.9691
AT5G60930			P-loop containing nucleoside t...		Potri.002G106100 [exp]	6.70	0.9653
AT1G21510			unknown protein		Potri.002G076200 [exp]	6.92	0.9487
AT5G66230			Chalcone-flavanone isomerase f...		Potri.007G057800 [exp]	9.16	0.9660
AT5G16250			unknown protein		Potri.013G127900 [exp]	9.16	0.9634
AT3G03130			unknown protein		Potri.019G046801 [exp]	10.19	0.9369
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103200 [exp]	10.39	0.9601
AT2G33400			unknown protein		Potri.010G067300 [exp]	12.00	0.9631

Compare expression of checked genes

Potri.016G138300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.