Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATPK19.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08720 638 / 0 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 606 / 0 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT5G62310 237 / 2e-68 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G17850 234 / 2e-67 Protein kinase superfamily protein (.1) AT1G48490 224 / 1e-63 Protein kinase superfamily protein (.1.2.3) AT5G09890 210 / 7e-62 Protein kinase family protein (.1.2) AT5G58140 215 / 2e-61 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT1G45160 216 / 3e-61 Protein kinase superfamily protein (.1.2) AT4G33080 201 / 9e-59 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT5G04510 196 / 1e-57 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109600 [exp] 862 / 0 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G073700 [exp] 477 / 5e-166 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G044700 [exp] 233 / 6e-67 AT3G17850 1531 / 0.0 Protein kinase superfamily protein (.1) Potri.015G035600 [exp] 228 / 3e-65 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1) Potri.012G127800 [exp] 228 / 3e-65 AT5G62310 1318 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.015G129200 [exp] 227 / 6e-65 AT5G62310 1359 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G263000 [exp] 224 / 7e-64 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G061800 [exp] 199 / 3e-62 AT3G08720 197 / 8e-62 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.004G209700 [exp] 216 / 1e-61 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025213 [exp] 571 / 0 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 468 / 7e-161 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10021386 [exp] 448 / 9e-158 AT3G08720 445 / 4e-157 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10036653 [exp] 458 / 2e-156 AT3G08720 515 / 1e-178 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10022732 [exp] 387 / 1e-131 AT3G08720 401 / 1e-137 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10014181 [exp] 365 / 3e-123 AT3G08720 307 / 1e-100 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10027196 [exp] 234 / 2e-67 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038912 [exp] 232 / 2e-66 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10031332 [exp] 231 / 3e-66 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10042650 [exp] 215 / 1e-63 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.016G138400.3 pacid=42810417 polypeptide=Potri.016G138400.3.p locus=Potri.016G138400 ID=Potri.016G138400.3.v4.1 annot-version=v4.1 ATGGTTTCCTCTCAATTGCCTGGTTTGACAAAGAACCGGTTGTTGTTTCCCGTTAATCCCTCTGATACTGTAGTATCAGATCATGTTGAACTTGATTTCA CTGATGTGTTTGGCCCTTTGCCGTCAATAGATGTGAATTGTGGTGATCCTTTGTCTGTAGGAGATGGTAGTGAGCTTATTTATGATGACCCTGTTGTTGT TCATAACCGGTCACATTCGTTGGTTGGCCCCTCTTCTTATGTTAGCCAATCATTGAAGCTCAGCAAACTTAACTTGCAAGAGACGGAAGATTCATTGGAA CTGGTTGAGTGTGTCCTGGACGAGACTATTAAAGAACTAGAGGAGTCTTTCATAGATGATGATGCTGTTGAGAAAGACATGGAGGATGTCAGTGGAGATA CTTCGAAGGTTCAAACTGTTGGTATTGAAGATTTTGAGGTTTTGAAGGTTGTTGGGCAGGGTGCATTTGGGAAAGTTTATCAGGTGAGGAAAAAGGGTAC ACCAGAAATATATGCAATGAAGGTCATGCGGAAGGACAGAATAGTGGAGAAAAATCATGTTGAATACATGAGAGGTGAAAGGGATATTCTAACAAAAATA GATCATCCCTTCATTGTCCAGCTCAAATACTCCTTCCAAACCAAATATAGGCTATACCTTGTGTTGGATTTCATAAATGGGGGCCACCTTTTTTTCCAGC TCTATAACCATGGCCTTTTCAGGGAGGATCTGGCATGTATATATGCTGCTGAGATTGCTTCTGCAGTTTCTCACCTTCATGCAAATGGCATAATGCATAG GGATCTTAAGCCAGAAAATATCCTGCTGGATTCAGATGGCCATGCAATGTTGACTGATTTTGGCCTGGCAAAGGAATTTGATGAAAATACAAGATCAAAC TCAATGTGTGGAACAGTTGAATATATGGCACCTGAAATTGTTCAGGGAAAGGGTCATGATAAGGCAGCAGATTGGTGGAGTGTGGGAATTCTGTTGTATG AGATGCTAACTGGCAAGCCTCCTTTTATTGGTGGGAATAGAAACAAAATTCAACAGAAAATAGTCAAGGATAAGATCAAGCTGCCATCGTTTTTGTCAAG TGAAGCACACTCTCTGTTGAAAGGGCTCTTAAACAAGGATGCCGCCAAGCGCTTAGGAAGTGGATCATTGGGAAGTGAAGAGATTAAGCGACACAAGTGG TTCAAGCCAATCAACTGGAAGAAATTGGATGCCAGGGAGATCCAGCCCAGTTTCCGTCCAGAAGTGGCTGGGAAGCATTGCATAGCTAACTTCGATAAGT GTTGGACTGACATGAAATTATCAGATTCTCCAGCTGCCAGTCCCAAGACGAATACCAATCCCTTTGTGAACTTCACTTATGTTAGGCCTGCGGCCTCTTT CCTTAAACAGAATAGCCCCCTATGTTAG
AA sequence Show only first row Show all	>Potri.016G138400.3 pacid=42810417 polypeptide=Potri.016G138400.3.p locus=Potri.016G138400 ID=Potri.016G138400.3.v4.1 annot-version=v4.1 MVSSQLPGLTKNRLLFPVNPSDTVVSDHVELDFTDVFGPLPSIDVNCGDPLSVGDGSELIYDDPVVVHNRSHSLVGPSSYVSQSLKLSKLNLQETEDSLE LVECVLDETIKELEESFIDDDAVEKDMEDVSGDTSKVQTVGIEDFEVLKVVGQGAFGKVYQVRKKGTPEIYAMKVMRKDRIVEKNHVEYMRGERDILTKI DHPFIVQLKYSFQTKYRLYLVLDFINGGHLFFQLYNHGLFREDLACIYAAEIASAVSHLHANGIMHRDLKPENILLDSDGHAMLTDFGLAKEFDENTRSN SMCGTVEYMAPEIVQGKGHDKAADWWSVGILLYEMLTGKPPFIGGNRNKIQQKIVKDKIKLPSFLSSEAHSLLKGLLNKDAAKRLGSGSLGSEEIKRHKW FKPINWKKLDAREIQPSFRPEVAGKHCIANFDKCWTDMKLSDSPAASPKTNTNPFVNFTYVRPAASFLKQNSPLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.016G138400 [exp]	0	1	Pt-ATPK19.2
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.006G109600 [exp]	13.96	0.7150	Pt-ATPK19.1
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Potri.008G102800 [exp]	29.15	0.5524	GAL1.2
AT4G16260			Glycosyl hydrolase superfamily...		Potri.010G142800 [exp]	34.56	0.5994	HGN1.1
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.009G025700 [exp]	39.24	0.5929	ACA3.2
AT3G12560		ATTBP2, TRFL9	TELOMERIC DNA-BINDING PROTEIN ...		Potri.010G202400 [exp]	62.80	0.5116
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.005G248900 [exp]	86.74	0.5280
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Potri.009G060400 [exp]	140.41	0.4985

Compare expression of checked genes

Potri.016G138400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.