Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01920 596 / 0 STN8 State transition 8, Protein kinase superfamily protein (.1) AT1G68830 233 / 5e-70 STN7 STT7 homolog STN7 (.1) AT1G12680 59 / 3e-09 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT1G03740 56 / 4e-08 Protein kinase superfamily protein (.1.2) AT4G08470 56 / 6e-08 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08500 55 / 7e-08 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G12020 54 / 2e-07 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT1G09000 53 / 4e-07 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54610 53 / 4e-07 Protein kinase superfamily protein (.1.2.3) AT3G07980 53 / 4e-07 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109700 [exp] 834 / 0 AT5G01920 597 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Potri.008G116800 [exp] 231 / 8e-69 AT1G68830 883 / 0.0 STT7 homolog STN7 (.1) Potri.010G129532 [exp] 129 / 9e-35 AT1G68830 296 / 1e-98 STT7 homolog STN7 (.1) Potri.005G251500 [exp] 62 / 4e-10 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.017G048400 [exp] 62 / 7e-10 AT1G12680 471 / 7e-164 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.007G112400 [exp] 60 / 3e-09 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.019G073100 [exp] 56 / 4e-08 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G143900 [exp] 55 / 9e-08 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G033400 [exp] 55 / 1e-07 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014183 [exp] 605 / 0 AT5G01920 651 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10022730 [exp] 519 / 0 AT5G01920 530 / 0.0 State transition 8, Protein kinase superfamily protein (.1) Lus10034273 [exp] 228 / 2e-68 AT1G68830 832 / 0.0 STT7 homolog STN7 (.1) Lus10041490 [exp] 153 / 2e-40 AT1G68830 754 / 0.0 STT7 homolog STN7 (.1) Lus10036464 [exp] 61 / 2e-09 AT1G12680 607 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10041132 [exp] 59 / 5e-09 AT1G12680 608 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10034726 [exp] 59 / 8e-09 AT1G18670 782 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10021642 [exp] 57 / 3e-08 AT1G18670 736 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10002469 [exp] 56 / 4e-08 AT1G71530 429 / 3e-143 Protein kinase superfamily protein (.1.2) Lus10014657 [exp] 54 / 7e-08 AT1G08650 351 / 2e-122 phosphoenolpyruvate carboxylase kinase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.016G138500.1 pacid=42810181 polypeptide=Potri.016G138500.1.p locus=Potri.016G138500 ID=Potri.016G138500.1.v4.1 annot-version=v4.1 ATGGCTTCTCTGATATCTCCAGTGACACCTGCACCTCAGCAGAATCCTAAAATTATTTGCTTTTCTACTTTCAAGCCCAATTTCCATAATGATATTTCTT CATTCACTAACCGTTTGAAAGGTAACTCAGGCAGGTGTAAAGCTTTCTTTGGCAATATCCCGGATGATTTATTGGAGAACACTCTTCAACTGGACCAATT CTCAGTTTTTCAATCTGGGTTGGTGCAATTTCAGAGTGTGACTGAGGAACTCTCAGATACTCAGAAATGGGGTCTTCTGGTTTTTGCTGGGGTGGCATGG ATTTACTTGACTGCAAGGCCTGGTATTCTCATAGGTGCCATCGATGCATACCTTCTGGCTCCTTTGCAACTTGGTTTGGACAGTTTGAGTGGAAGGAGGA ACCTGAAGAGGAGTGATTTCCTGGTTGGGGATAAATTGGGAGAAGGTTCTTTTGGTGTTGTTTATTCTGGGGTGGTTGTTCCAAGGAATGCAACTGTAGA CGAGAAGGTGCCGAAGACGGGGACAGGAAGAGCATTGCAATTGAGTACGAGGTTCAAAGAAAAGGTTATACTAAAGAAGGTGAAGGTTGGAGTCACAGGA GCAGAACAATTCGGCGAATATGAGGAGTGGTTTAATTACAGGCTGTCAAGAGCAGCTCCTGAAACTTGTGCTAAGTTCCTTGGAAGTTTTGTTGCTGAAT CTGACAGAACAAGTTCACAATTTACAAAGGGTGGAAAATGGCTTGTTTGGAAATTTGAGGGAGATCAAACCCTTGGCGATTACATGAAAGATCGCAACTT CCCTTTTAACTTGGAGTCCATCATGTTTGGAAGGGTCCTGCAAGGAGTTGATTCTGTTAAACGAAGTGCATTGATCATCAAACAAATAATGCGCCAAATT ATTACTTCGCTTAAGAAAATCCATGATACTGGGATTGTTCACAGGGACGTAAAGCCAGCCAACATAGTGGTGACAAAGAAGGGAAAGATTAAGCTCATAG ATTTTGGGGCAGCCACTGACCTCCGGATTGGCAAGAACTACATACCTGATCAAAGTCTGCTTGATCCGGACTATTGTCCACCTGAACTATTTGTGCTGCC AGAGGAGACACCAAGTCCTCCACCTGAGCCAGTTGCTGCCCTTCTTTCTCCAATTTTATGGCAGTTAAACAGCCCTGATCTATTTGATTCATACTCTGCC GGGATTGTTCTCCTGCAAATGGCAATACCAAGCTTAAGGCCTGTATCAGGCTTGAAGAATTTCAATACAGAAATAAAGAAAGCTAGATATGACTTGAATA TATGGAGGGAGAGCACTCGATTGAGGCCAGACTTGACAATTCTTGAACTTGACTCAGGTAGAGGGTGGGATCTAGCTACAAAACTGATTTCAGAAAGAGG TTATCTTGGAAGGGGACGTTTATCAGCAGCTGCAGCTCTAAGGCATCCTTATTTCTTGTTGGGGGGTGATCAGGCAGCCACAGTTCTTTCGAAGCTTAGC TTAACAAAATAG
AA sequence Show only first row Show all	>Potri.016G138500.1 pacid=42810181 polypeptide=Potri.016G138500.1.p locus=Potri.016G138500 ID=Potri.016G138500.1.v4.1 annot-version=v4.1 MASLISPVTPAPQQNPKIICFSTFKPNFHNDISSFTNRLKGNSGRCKAFFGNIPDDLLENTLQLDQFSVFQSGLVQFQSVTEELSDTQKWGLLVFAGVAW IYLTARPGILIGAIDAYLLAPLQLGLDSLSGRRNLKRSDFLVGDKLGEGSFGVVYSGVVVPRNATVDEKVPKTGTGRALQLSTRFKEKVILKKVKVGVTG AEQFGEYEEWFNYRLSRAAPETCAKFLGSFVAESDRTSSQFTKGGKWLVWKFEGDQTLGDYMKDRNFPFNLESIMFGRVLQGVDSVKRSALIIKQIMRQI ITSLKKIHDTGIVHRDVKPANIVVTKKGKIKLIDFGAATDLRIGKNYIPDQSLLDPDYCPPELFVLPEETPSPPPEPVAALLSPILWQLNSPDLFDSYSA GIVLLQMAIPSLRPVSGLKNFNTEIKKARYDLNIWRESTRLRPDLTILELDSGRGWDLATKLISERGYLGRGRLSAAAALRHPYFLLGGDQAATVLSKLS LTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01920		STN8	State transition 8, Protein ki...		Potri.016G138500 [exp]	0	1
AT1G35340			ATP-dependent protease La (LON...		Potri.013G105500 [exp]	1.73	0.9794
AT4G17740			Peptidase S41 family protein (...		Potri.008G173900 [exp]	3.00	0.9736
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Potri.006G147300 [exp]	3.46	0.9736
AT5G19940			Plastid-lipid associated prote...		Potri.006G276400 [exp]	3.74	0.9763
AT2G32500			Stress responsive alpha-beta b...		Potri.014G154900 [exp]	4.89	0.9661
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Potri.006G034300 [exp]	6.48	0.9653
AT1G50450			Saccharopine dehydrogenase (....		Potri.009G050100 [exp]	6.92	0.9626
AT5G52100		CRR1	chlororespiration reduction 1,...		Potri.015G135400 [exp]	7.48	0.9633
AT2G01755			unknown protein		Potri.008G135400 [exp]	8.48	0.9639
AT1G52220			unknown protein		Potri.001G184700 [exp]	8.94	0.9645

Compare expression of checked genes

Potri.016G138500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.