Plant FIBer expression Database

Potri.016G139000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G38580 241 / 7e-74 Mitochondrial ATP synthase D chain-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G110400
[exp]
574 / 0 AT2G38580 252 / 4e-78 Mitochondrial ATP synthase D chain-related protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021384
[exp]
288 / 1e-92 AT2G38580 187 / 3e-54 Mitochondrial ATP synthase D chain-related protein (.1)
Lus10025211
[exp]
152 / 5e-42 AT2G38580 126 / 1e-32 Mitochondrial ATP synthase D chain-related protein (.1)
PFAM info
Representative CDS sequence
>Potri.016G139000.12 pacid=42809749 polypeptide=Potri.016G139000.12.p locus=Potri.016G139000 ID=Potri.016G139000.12.v4.1 annot-version=v4.1
ATGGAGGAAGAGAAGAAGAAGAAGCGAAACAAGAAAAAGAAAAACAAACAGAACAATCATGGTAATAGTAATAGTAATCAAGCAGCGGAAGACGACGTGT
CGGTTGATCATCATAACAACAACAACAATGGGCAGAATCATGGTAATGAGAATGATAATCAAGTAATAGAGGTATCTTCAAATGGTGATGCTGTGGATGT
GGAGGATTTTAATACACATAATGATAAGCCCAATGGAGTAGCACCACAATCTTCCATCTTGGCTGAAGCAGAGAAGCAGTGGTGGCTTCAAAGAGAGGCT
GCTTTACAAGATACAATCAAACATTTACAAAATGAAACCGATTCACTCATAAAGACACAGGCTACCTTTGAAGAGACAATCAAACAATTAGAAGATGAAA
ATGATTCACACATACAGAAAGAGGTTACCTTTGAAGAGACAATCAAACAATTACAAGATGAAAATGATTCACACATACAGAAAGAGGCTTCCTTAGAAGA
AACAATCAATCAATTAAGAAGTGTAAACAATTCGTGCGTAAAGAAAGAGGCTACCTTTGAAGATACAATCAAACAATTGAAAACTGAAAATGATTTGCAC
ATGCAGAAAGAGGCTGGTTTAGAGATGAAAATCATGCAATTGCAGAGAGAAAAGGATTTCTGGTTTCTGAAAGAGGCTGGCCTGGAGGAGAAACTTAATC
TCTTACTGGATGAGAAGGCTGCTCTGGGTTTAAAACTGGCAAGCCTAGAGGAAAAAATTGGACAGTTAGATAGTGAGAAAGATTCTTGGGCTGTATCAGA
GAATACAACCAAAGAAATTGTTGGTAGAATGAATATCGACATCACAAGTCTACGAATGCAGGTGGTGGAGTTGGAATATTCCAGGAATAGTCTCGTGAAA
GAAAACCAACAGCTGAAGGAAAGTGTCTCTGACCTGAAGTTACAGCTTCAAAATGTTGAGACTCAACAGAGCATCTCCTCTGCTAACACATCAGAACTTG
GAAAGAATGATGCTGAAAAAGAGGACTTGAACTCCCAGATTGAAGCAGCTTGTGCGCTGGTGGACAAATTGATCACTGAAAATGCAGAACTTGTTGAGAA
AGTGAATGAGTTGTACATTAAACTTGACCAACAAAAGGCAGCAGCTAGTCTTTCTTCATCTGCCGGAAGTGATGTCATTCTTAGAAATTCTGAACTTGCC
AATGGAACTCCTCCCATGTCTGAATCAAGCGAGTCCGCATTGGGCCTTAAGTCAGAGTCCTTAGACGCAGATCCCCCTGCTGCGGTGCTCCCACAATCTT
CAGAACCTGACGCAGAAGAAATTGTGCAAATCCCATTGGATGATAATGAAGTTCCAGATGTGGAGATGCAAGCTGAAGATAAGAGCGGCGTGCCGCTCAC
GGATGCTCCACTAATAGGAGCTCCTTTCCGGTTAATATCATTTGTTGCTAAATATGTCAGTGGTGCTGACCTGGTCAGCAAAGATGATTCAAATTAG
AA sequence
>Potri.016G139000.12 pacid=42809749 polypeptide=Potri.016G139000.12.p locus=Potri.016G139000 ID=Potri.016G139000.12.v4.1 annot-version=v4.1
MEEEKKKKRNKKKKNKQNNHGNSNSNQAAEDDVSVDHHNNNNNGQNHGNENDNQVIEVSSNGDAVDVEDFNTHNDKPNGVAPQSSILAEAEKQWWLQREA
ALQDTIKHLQNETDSLIKTQATFEETIKQLEDENDSHIQKEVTFEETIKQLQDENDSHIQKEASLEETINQLRSVNNSCVKKEATFEDTIKQLKTENDLH
MQKEAGLEMKIMQLQREKDFWFLKEAGLEEKLNLLLDEKAALGLKLASLEEKIGQLDSEKDSWAVSENTTKEIVGRMNIDITSLRMQVVELEYSRNSLVK
ENQQLKESVSDLKLQLQNVETQQSISSANTSELGKNDAEKEDLNSQIEAACALVDKLITENAELVEKVNELYIKLDQQKAAASLSSSAGSDVILRNSELA
NGTPPMSESSESALGLKSESLDADPPAAVLPQSSEPDAEEIVQIPLDDNEVPDVEMQAEDKSGVPLTDAPLIGAPFRLISFVAKYVSGADLVSKDDSN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G38580 Mitochondrial ATP synthase D c... Potri.016G139000
[exp]
0 1
AT2G46700 ATCRK3 CDPK-related kinase 3 (.1.2) Potri.014G103500
[exp]
1.41 0.9225
AT1G34550 EMB2756 EMBRYO DEFECTIVE 2756, Protein... Potri.013G113700
[exp]
2.82 0.9063
AT3G18480 AtCASP CCAAT-displacement protein alt... Potri.012G061000
[exp]
4.47 0.9138
AT1G53040 Protein of unknown function (D... Potri.001G399800
[exp]
7.41 0.8997
AT2G38580 Mitochondrial ATP synthase D c... Potri.006G110400
[exp]
11.66 0.8700
AT4G32120 Galactosyltransferase family p... Potri.006G257200
[exp]
12.84 0.9030
AT1G68200 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.010G118700
[exp]
17.88 0.9007
AT5G18280 ATAPY2 apyrase 2 (.1.2) Potri.013G053500
[exp]
19.59 0.9122
AT2G40820 unknown protein Potri.016G033100
[exp]
20.83 0.8975
AT4G11950 Protein of unknown function (D... Potri.003G119400
[exp]
21.21 0.9006

Potri.016G139000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.