Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14360 560 / 0 ATUTR3, UTR3 UDP-galactose transporter 3 (.1) AT2G02810 533 / 0 ATUTR1, UTR1 UDP-galactose transporter 1 (.1) AT5G59740 111 / 8e-28 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT3G46180 110 / 2e-27 UTR5, ATUTR5 UDP-galactose transporter 5 (.1) AT1G12600 73 / 3e-14 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT4G23010 72 / 4e-14 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G110500 [exp] 568 / 0 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1) Potri.001G234800 [exp] 114 / 1e-28 AT5G59740 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.003G121000 [exp] 75 / 5e-15 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.001G111000 [exp] 73 / 2e-14 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.014G077500 [exp] 71 / 1e-13 AT1G12600 566 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030495 [exp] 573 / 0 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1) Lus10012848 [exp] 558 / 0 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1) Lus10005881 [exp] 119 / 6e-31 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10040866 [exp] 83 / 6e-18 AT5G59740 479 / 8e-172 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10029605 [exp] 74 / 1e-14 AT1G12600 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10006337 [exp] 74 / 1e-14 AT1G12600 555 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10009315 [exp] 74 / 2e-14 AT1G12600 557 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10015850 [exp] 69 / 4e-13 AT1G12600 484 / 1e-173 UDP-N-acetylglucosamine (UAA) transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF08449 [poplar] [flax] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Potri.016G139100.2 pacid=42809292 polypeptide=Potri.016G139100.2.p locus=Potri.016G139100 ID=Potri.016G139100.2.v4.1 annot-version=v4.1 ATGGAGGCACGCGGCGGAAGCAGCCTCCGGCGAGTCTTGGTGCTGGCCTTTTGCGTAGCCGGGATCTGGTCGGCTTACATATATCAAGGTGTTCTTCAAG AAACTCTATCGACGAAGCGATTTGGTGCAGACGGGAAGAGATTTGAGCAGCTTGCGTTCTTAAATCTGGTGCAAAGTGTAGTTTGCTTAATTTGGTCTTA TATAATGATAAAGATTTGGTCGACGGGCAGCGGCGGCGCTCCGTGGTGGTCATACTGGAGTCCTGGCATTACAAATACAATTGGTCCTGCTATGGGCATT GAAGCCCTAAAGTATATCAGTTACCCTGCCCAGGTCTTGGCCAAATCATCCAAAATGATTCCAGTGATGTTTATGGGTTGTTTGGTATATGGAGTAAGCT ACACTGTTCCCGAGTATCTTTGTACTTTCCTTGTTGCTGGAGGGGTGTCTACATTTGCTCTTTTGAAGACTAGCTCGAAGACGATTAATAAGCTAGCACA TCCAAATGCACCCATTGGATATGGTCTTTGTTTCTTGAACCTTGCATTTGATGGGTTTACTAATGCGACTCAGGATTCACTTACAGCAAGGTATCCAAAG ACAAGTGCTTGGGATATAATGCTGGGAATGAATTTGTGGGGCACCATATACAATCTGATCTACATGTTTGGCTGGCCACATGGTATTGGCTATGAGGCAA TCGAATTCTGCAAGCAGCATCCAGAGGCTGCATGGGACATTTTGCTCTACTGCCTGTGCGGTGCTGTGGGCCAGAACTTCATCTTCTTAACCATTAGCCG ATTCGGGTCTCTTGCCAACACGACCATCACCACAACCCGCAAGTTTGTCAGCATTGTGGTTTCTTCAGTGCTTAGTGGCAATCCCCTGTCAGCAAAACAA TGGGGATGTGTAGCCATGGTCTTCTCAGGGTTATCATATCAGATATACCTCAAGTGGAGAAAATTGCAGAAACTGCAGAAGAAGAGAAAGCCTATGTGA
AA sequence Show only first row Show all	>Potri.016G139100.2 pacid=42809292 polypeptide=Potri.016G139100.2.p locus=Potri.016G139100 ID=Potri.016G139100.2.v4.1 annot-version=v4.1 MEARGGSSLRRVLVLAFCVAGIWSAYIYQGVLQETLSTKRFGADGKRFEQLAFLNLVQSVVCLIWSYIMIKIWSTGSGGAPWWSYWSPGITNTIGPAMGI EALKYISYPAQVLAKSSKMIPVMFMGCLVYGVSYTVPEYLCTFLVAGGVSTFALLKTSSKTINKLAHPNAPIGYGLCFLNLAFDGFTNATQDSLTARYPK TSAWDIMLGMNLWGTIYNLIYMFGWPHGIGYEAIEFCKQHPEAAWDILLYCLCGAVGQNFIFLTISRFGSLANTTITTTRKFVSIVVSSVLSGNPLSAKQ WGCVAMVFSGLSYQIYLKWRKLQKLQKKRKPM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.016G139100 [exp]	0	1
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Potri.016G088600 [exp]	2.00	0.8797
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Potri.002G198000 [exp]	3.46	0.8748
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.015G109200 [exp]	4.24	0.8749	CNX1.1
AT4G16660			heat shock protein 70 (Hsp 70)...		Potri.006G022100 [exp]	5.65	0.8460
AT4G12340			copper ion binding (.1)		Potri.001G118700 [exp]	6.92	0.8282
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Potri.002G248300 [exp]	9.48	0.8791
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Potri.011G092200 [exp]	9.84	0.7426	Pt-PPX1.2
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.016G003400 [exp]	10.95	0.8232
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.001G466000 [exp]	11.48	0.8154
AT4G02450			HSP20-like chaperones superfam...		Potri.005G199700 [exp]	11.83	0.8469

Compare expression of checked genes

Potri.016G139100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.