Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58300 691 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 691 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 618 / 0 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT2G26730 533 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 529 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 457 / 5e-154 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 448 / 6e-151 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 440 / 1e-146 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G24100 438 / 2e-146 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 432 / 9e-144 RKL1 receptor-like kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G158800 [exp] 769 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 763 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 741 / 0 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 577 / 0 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 573 / 0 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 570 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 533 / 0 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 518 / 5e-177 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044600 [exp] 458 / 5e-154 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035012 [exp] 745 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 732 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 720 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 714 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021383 [exp] 618 / 0 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025210 [exp] 614 / 0 AT3G08680 669 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 551 / 0 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029005 [exp] 546 / 0 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10032351 [exp] 544 / 0 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 519 / 5e-178 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G139200.1 pacid=42809945 polypeptide=Potri.016G139200.1.p locus=Potri.016G139200 ID=Potri.016G139200.1.v4.1 annot-version=v4.1 ATGATGATGCTCTCATTTTCTGTGGCCTTGACATGGTCTTTATTGCTGCTTTTCCTTCACCATAGTGTGGCTGCCCTCCTTTCTGATAGACAAGCCCTCC TTGAATTTGCTTCTGCAGTTCCTCATAGCCCAAAACTTAACTGGAACTCTAGCACCCCAATATGCACCTCTTGGGTTGGTATCGCTTGCAACACAGAAGG CTCCCGTGTGGTTGCTGTCCACCTCCCTGGTGTTGGACTCTATGGTCCTATTCCAGCCAAAACACTTGGGAAACTGGATTCCCTAACGATCCTCAGTCTC CGGTCCAACTTCCTTAGCGGGGATCTCCCAGCAGATTTACTCTCCCTTCCTTCGCTCCACTCCATATATCTTCAACATAATAATTTCTCAGGTAACATCC CATCTTCCTTCTCTCCCCGGACTAGCATGCTTGACCTTTCATTCAATTCCTTCACTGGACTTATTCCAGCTGCCATGCAAAATTTAACACGCCTTACTAG CTTGAGCCTCCAAAACAATTTACTCTCAGGACCCATACCTGAATTCAATATATCAGGGATCACGCAATTAAATTTGAGCTACAATCTCTTGAATGGTTCT ATTCCAGCTGCCCTCCAAAAGTTTCCTACCTCCTCCTTTGAAGGGAACAACATGCTATGTGGACCACCACTAAAACTGTGTAATGCATCTACCCCTTCAC CTTCTCCGAGCCCCACTTCCTTACCACCACCTCCAACAGTGACTAAAAGACCAAGTGATGGCTCCAAGAAGAAACTAAGTAGGGGATATATCATTGGTAC TGCAGTTGGAAGTTCTGCATTGCTATTGTTTCTACTTGTAATGATTGTGGTTTGCTGTGTGAAGAAAAAAAGTGGTGAAAGTAATGGTGTGCTAAAAGGG AAGGGGGGCAGGACTGAGAAGCCTAGTAAAGACTTTGGGAGTGGGGTGCAAGAAGCTGAGAAGAACAAGCTTGTGTTTTTTGAAGGTTGTTCTTGCAATT TCGACCTTGAGGATTTATTAAGAGCTTCAGCTGAAGTGCTAGGAAAGGGGAGTTATGGGACAACCTATAAGGCCATCTTGGAGGAGGGTATGACGGTGGC TGTGAAGAGGTTGAAAGAAGTGGTGGTTGGGAAAAAGGAGTTTGAGCAACAGATGGAGATTGTTGGGAGTGTAGCCCGGCACCCACATGTCATGCCTCTT CGCGCTTATTACTACTCCAAGGATGAGAAACTCTTGGTTTATGACTATGCACCATCTGGCAGCTTTTTCACGGTGTTGCATGGAAACAGGGAAGTTGGAC GAACTGCTCTAGATTGGGAATCCAGAGTAAAGATCTGCCTTGGAACTGCAAAAGGCATCGCCTATATCCATTCTGCTTGTGGAGGGAAATTCATTCATGG CAACATCAAGTCCTCCAATGTACTCCTGATGCAAGACCTCCACGGATGCATCTCAGATTTTGGTTTAACTCCTCTATTGAGTTACCCTAGTGTCCCATCA AGAAGTGCAGGCTACCGGGCTCCAGAAGTGATCGATACACGAAAATCTACTCAGAAATCTGACGTCTACAGTTTTGGTGTTGTCCTCCTTGAGATGCTGA CGGGAAAAGCACCAGTTCAATCACCGGGGCATGATGATGTGATTGATCTCCCAAGATGGGTCCAGTCTGTTGTTCGAGAGGAATGGACAGCGGAAGTGTT TGACGAGGAGCTAATGAGATACCAGAACATCGAAGAGGAGATGGTAGAGATGCTTCAAATAGCAATGGCTTGTGTGGCAGTGGTGCCAGACATGAGGCCT ACCATGGAAGAAGTAGTTAGGATGATTGAAGAAGTCGGGTCATCTGAATCTGAGAACCGCCCATCATCAGAGGAGAACAAGGGATCAGACACATAA
AA sequence Show only first row Show all	>Potri.016G139200.1 pacid=42809945 polypeptide=Potri.016G139200.1.p locus=Potri.016G139200 ID=Potri.016G139200.1.v4.1 annot-version=v4.1 MMMLSFSVALTWSLLLLFLHHSVAALLSDRQALLEFASAVPHSPKLNWNSSTPICTSWVGIACNTEGSRVVAVHLPGVGLYGPIPAKTLGKLDSLTILSL RSNFLSGDLPADLLSLPSLHSIYLQHNNFSGNIPSSFSPRTSMLDLSFNSFTGLIPAAMQNLTRLTSLSLQNNLLSGPIPEFNISGITQLNLSYNLLNGS IPAALQKFPTSSFEGNNMLCGPPLKLCNASTPSPSPSPTSLPPPPTVTKRPSDGSKKKLSRGYIIGTAVGSSALLLFLLVMIVVCCVKKKSGESNGVLKG KGGRTEKPSKDFGSGVQEAEKNKLVFFEGCSCNFDLEDLLRASAEVLGKGSYGTTYKAILEEGMTVAVKRLKEVVVGKKEFEQQMEIVGSVARHPHVMPL RAYYYSKDEKLLVYDYAPSGSFFTVLHGNREVGRTALDWESRVKICLGTAKGIAYIHSACGGKFIHGNIKSSNVLLMQDLHGCISDFGLTPLLSYPSVPS RSAGYRAPEVIDTRKSTQKSDVYSFGVVLLEMLTGKAPVQSPGHDDVIDLPRWVQSVVREEWTAEVFDEELMRYQNIEEEMVEMLQIAMACVAVVPDMRP TMEEVVRMIEEVGSSESENRPSSEENKGSDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58300			Leucine-rich repeat protein ki...		Potri.016G139200 [exp]	0	1
AT4G05220			Late embryogenesis abundant (L...		Potri.011G027400 [exp]	2.23	0.9495
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.015G077100 [exp]	10.39	0.8960
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Potri.007G024500 [exp]	12.96	0.8942	Pt-MNP.1
AT5G20870			O-Glycosyl hydrolases family 1...		Potri.006G216700 [exp]	13.30	0.9215
AT1G54860			Glycoprotein membrane precurso...		Potri.005G034300 [exp]	13.34	0.9231
					Potri.001G444350 [exp]	13.41	0.9140
AT1G29380			Carbohydrate-binding X8 domain...		Potri.011G078500 [exp]	15.16	0.9157
AT5G22870			Late embryogenesis abundant (L...		Potri.009G003800 [exp]	18.00	0.9177
AT1G79480			Carbohydrate-binding X8 domain...		Potri.008G082900 [exp]	18.13	0.9100
AT3G18260			Reticulon family protein (.1)		Potri.015G044300 [exp]	20.85	0.9007

Compare expression of checked genes

Potri.016G139200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.