Plant FIBer expression Database

Potri.016G139350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037463
[exp]
711 / 0 ND /
Lus10003927
[exp]
417 / 1e-143 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF13360 PQQ_2 PQQ-like domain
Representative CDS sequence
>Potri.016G139350.2 pacid=42808916 polypeptide=Potri.016G139350.2.p locus=Potri.016G139350 ID=Potri.016G139350.2.v4.1 annot-version=v4.1
ATGGTGAATATTGCAGCTGAAATGGCTTATCTTGAGACCAAGAAATATCTTAGCACCATTGGCTTTCTTGTCATCGTTCTATGCCTATTTCCTGCAATGG
ATGACGCTACTGCAGTTTGGCTAAATCATGGAGCTGATATTAGCAATACAAGAAGTGCAAAGGGAGAGGTGCTAATCAATCGATTGACAGTTAAGAATTT
GCGGCTAAAATGGACATTCTTTGCCGGTAAAGACATATCTGCAACTCCAGCAATAGCCAATGGAGTTGTATATTTTCCATCTTGGAATGGATTTTTGTAT
GCAGTTAATGCATTCAACGGTGCTTTAATATGGAGGCAGAACCTCAGTCAGCTAACCGGACTAAATGGCACCGGAATCGTAGTGAACGTGACCGTGTCAA
GATCAACCCCGACAATAGCCGACGACCTCTTGCTTGTTGGAATTTATGGGCCTGCTGTAGTGATTGCTGTCGCACGGGCCAGTGGGAGACTTGTGTGGTC
TACTCAACTAGATCCACGCCCTCGAGCACAGATTACGCAATCCGGAACATTTTACAACGGAGCTTTCTATGTTGGAGTTTCGTCACTAGAAGTAGGTTTA
CCTGCTAATCAGTGCTGCACTTTCCGAGGTAGCATGGCAAAGCTAAATGTTCGGACAGGCACCACCATATGGCGAACATACACGCTACCTGATAACGAAG
GCCAATTGGGAGGCTACTCAGGAGCTGCCATTTGGGGAAGCAGCCCTGCTATTGATGTAACTAGGAGACTGGTTTTCGTCGGAACTGGGAACCTCTACAC
GGCTCCTCGAGAAGTGACCCAGTGCCAAGAAGCACAAAATAATCAGACAACAAAACCAGCCCAGCCAGACCAGTGCATCGGGCCAGATATCCACTTCGAC
TCAATTTTGGCTATCGATATCGATACTGGAAGGATTAAATGGTCAAGGAAACTGAGTGGCTATGATGTTTTTTACTTTGCATGTTTGGTTCCTAACAACC
CCGATTGCCCTCCAGGACCTAATCTGGATGCAGATTTTGGAGAGGCACCCATGTTGCTTACCATCACTGCTAACCGAACTAGACGTGACGTTGCAGTGGC
TGTACAAAAGAGTGGCTTTGCCGTGGCTCTAGATCGAGACACTGGATCTATAGTCTGGTCTAAACTGGCAGGACCAGGTGGTTTGGAGGGAGGAGGGATA
TGGGGGGCAGCTACAGATGAGAGGACAGTGTATACGAACATTGCCAACAGCAATCGAGAGAGGTTCACACTGGCGCCGTCGAACCAGACAACAACAGTAG
GAGCATGGGTAGCACTGGATGCAAACTCAGGCCAAATATTGTGGTCCACAGCAAACCCCAGCAACGAAGCTGCTCAAGGACCCGTAACAATAGTAAATGA
TGTACTTTTTGCAGGATCGGTGGCTCCCAACGGCCCCATATATGCAATGGATGCCAAAACTGGCAATATTCTATGGTCATACAACACTGGTGCGACTGTA
TATGGCGGTGTATCAGCAAGTTACGGGTGTATCTATCTTGGAAATGGTTATTCAATTGGCCTGGCAAGGTTCCACCCTTCTTGGACTGGTGGAACTTCAC
TCTATGCTTTCTGCGTTGCCTAA
AA sequence
>Potri.016G139350.2 pacid=42808916 polypeptide=Potri.016G139350.2.p locus=Potri.016G139350 ID=Potri.016G139350.2.v4.1 annot-version=v4.1
MVNIAAEMAYLETKKYLSTIGFLVIVLCLFPAMDDATAVWLNHGADISNTRSAKGEVLINRLTVKNLRLKWTFFAGKDISATPAIANGVVYFPSWNGFLY
AVNAFNGALIWRQNLSQLTGLNGTGIVVNVTVSRSTPTIADDLLLVGIYGPAVVIAVARASGRLVWSTQLDPRPRAQITQSGTFYNGAFYVGVSSLEVGL
PANQCCTFRGSMAKLNVRTGTTIWRTYTLPDNEGQLGGYSGAAIWGSSPAIDVTRRLVFVGTGNLYTAPREVTQCQEAQNNQTTKPAQPDQCIGPDIHFD
SILAIDIDTGRIKWSRKLSGYDVFYFACLVPNNPDCPPGPNLDADFGEAPMLLTITANRTRRDVAVAVQKSGFAVALDRDTGSIVWSKLAGPGGLEGGGI
WGAATDERTVYTNIANSNRERFTLAPSNQTTTVGAWVALDANSGQILWSTANPSNEAAQGPVTIVNDVLFAGSVAPNGPIYAMDAKTGNILWSYNTGATV
YGGVSASYGCIYLGNGYSIGLARFHPSWTGGTSLYAFCVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G139350
[exp]
0 1
AT1G65620 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral o... Potri.010G177100
[exp]
3.16 0.9503 AS2.1
AT3G22640 PAP85 cupin family protein (.1) Potri.006G002500
[exp]
3.46 0.9766
AT4G01470 ATTIP1.3, GAMMA... tonoplast intrinsic protein 1;... Potri.004G216500
[exp]
4.58 0.9732
AT4G18830 OFP ATOFP5, OFP5 ovate family protein 5 (.1) Potri.015G004300
[exp]
4.89 0.9643
Potri.007G097700
[exp]
5.29 0.9669
AT3G57030 Calcium-dependent phosphotries... Potri.008G109966
[exp]
5.65 0.9580
AT1G34245 EPF2 EPIDERMAL PATTERNING FACTOR 2,... Potri.013G116600
[exp]
8.48 0.8847
AT1G20080 SYT2, NTMCTYPE1... synaptotagmin 2, Calcium-depen... Potri.002G019800
[exp]
9.79 0.9442
Potri.002G138100
[exp]
10.48 0.9202
AT5G44680 DNA glycosylase superfamily pr... Potri.003G156500
[exp]
12.84 0.9353

Potri.016G139350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.