Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08670 245 / 2e-73 unknown protein AT3G51540 82 / 3e-16 unknown protein AT2G40070 75 / 6e-14 unknown protein AT3G09000 63 / 4e-10 proline-rich family protein (.1) AT1G27850 59 / 7e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G110700 [exp] 407 / 3e-135 AT3G08670 251 / 1e-75 unknown protein Potri.010G190300 [exp] 74 / 1e-13 AT2G40070 368 / 6e-121 unknown protein Potri.008G066900 [exp] 74 / 1e-13 AT2G40070 321 / 1e-102 unknown protein Potri.010G056200 [exp] 59 / 9e-09 AT1G27850 240 / 1e-64 unknown protein Potri.010G177000 [exp] 54 / 2e-07 AT2G40070 82 / 9e-17 unknown protein Potri.016G114900 [exp] 49 / 6e-06 AT2G40070 352 / 7e-114 unknown protein Potri.008G178600 [exp] 47 / 3e-05 AT1G27850 567 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021382 [exp] 261 / 1e-78 AT3G08670 432 / 4e-145 unknown protein Lus10025209 [exp] 252 / 6e-75 AT3G08670 398 / 6e-131 unknown protein Lus10040188 [exp] 72 / 8e-13 AT2G40070 533 / 0.0 unknown protein Lus10004390 [exp] 66 / 9e-12 AT2G40070 321 / 5e-107 unknown protein Lus10030402 [exp] 61 / 1e-09 AT2G40070 561 / 0.0 unknown protein Lus10037838 [exp] 61 / 2e-09 AT2G40070 551 / 0.0 unknown protein Lus10006433 [exp] 57 / 6e-08 AT1G27850 501 / 1e-158 unknown protein Lus10011374 [exp] 56 / 7e-08 AT2G40070 151 / 8e-37 unknown protein Lus10004824 [exp] 53 / 5e-07 AT3G09000 286 / 3e-90 proline-rich family protein (.1) Lus10002493 [exp] 53 / 6e-07 AT2G40070 300 / 2e-95 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G139500.1 pacid=42809124 polypeptide=Potri.016G139500.1.p locus=Potri.016G139500 ID=Potri.016G139500.1.v4.1 annot-version=v4.1 ATGATGATGAGTAGTAGTAATAATAATAATAACGGTAATTATAGGAGTGTTAATGGGAGTTTGAGAGAGTCTTTAGTGGGAGGGAGAAATATTCCGGTGG GGTCCCAGTACCACCGCCGAGGTCATAGTTTGACGGGCGGCGGTGTTTTTTCTAAAGATACTCACAACAAGGATGAGAACTTGGATCTCTTCTCCAAGAA CCGCCGCAGTCTCTCTGTCGCCTCCTCCGATGAATCTTCTGATGTTTCAGTGAAATTGGGGAGACTTTCAGTTGGATCAGCCAAACTTGTGAGGAGTGGG ATCGATGATCTGTTATCATCAGAAGGAGGGAAGCATGATTATGATTGGCTTCTCACTCCCCCTGGAACTCCTCTTTTTCCGTCATCAGAAGGAAGTGAAT CACAACCAACTTTAGTGGCTCCACGAAGCAGTTCTTTGGCTAGATCAGCTTCTACTACCAAGGCGGCATCTACGCTTTCAGTTTCACAATCAGAGAGTTA CCATTCCTCAAGGCCAGCTAGAAGCAGCTCAGTGACTCGACCTTCTATATCTTCTTCACAATACAGTACCTATTCCTCAAATAGGTCCTCTTCAATCCTA AATACAAGCTCAGCCTCTGTCTCATCTTATACTAGACCATCCTCCCCAGTCTCCCGCACACCATCTATAGCAAGACCTTCCACACCATCAGCCCGCCCGA CACCATCACGTTCCTCAACTCCATCAAGAGCTCGTCCAGCCCCCACCAGCTCTTCAATTGACAAGACTCGACCCTCTCAAAATTCAAGACCCTCAACTCC AAGTTCTAGGGGACAAATTCCTGCAAACTTGAGTACAGCACCCACTAGATCAAATTCTCGTCCATCAACTCCCACACGTCGGAACCCAGCACCTTCCTCA TCCACTGCCTCAAGCCCTTCAACTTCTGCTGGACGAGTTCTTTCAAATAATCGCATTCCTGGACCAACATCCCGACCAAATTCCCCAAGCCCTCGAGTCC GTCCACAACAGCCAGTTGTTCCTCCTGATTTTCCTCTTGACACACCTCCAAACCTCAGAACAACTTTGCCAGACAGGCCACTTTCTGCAGGCAGGTCCCG GCCAAATGTTCATGCAACTATGAAGGGGAACCCAGAAACTGTAGGCTCTGTGATTGCACCAAGAAGACACTCATCTCCAATTGTCTCACGGGGAAGACTC ACAGAGCCATCTGGAAAGGGCCGTGTGCATAGTAATGGGCATATTGCTGATGCACCTGAGCCTCGAAAGGTCTCGCATGTGTCAGAATTAGGAATGAGAA AACCTGTGAAGTCATCATCAACAGCCTCAGAGAGCACCGGGTTTGGGAGGACTATATCTAAGAAGTCTCTGGATATGGCCATCAGGCATATGGACTTAAG AAATGGCACAGGAAGCACCCGATCACTTTCAAGCACCACCCTCTTCCCTCAGAGCATTAGATCTGCCACTCCCAAGACCCACCCTGCCCGTTCCAGGAGT GCTCCAGAATCCATCAACAATGGAAATTTGCAAAATGGAGATGTTTTGGAAAATGAAAGCTACTTTAGCAGGGCTACCGAAATCAGGCGTGAAGCAAATG ATGGACAACGATACTCTGCAAAATTGAGTGAAGTTGTTGACATCTGTGAAAGCTCTCGTTATGATGCAATATTACTCAAAGAGGATTTAAAGAACACGGA CTGGCTGCACAGTGTTGATGATAAATCTGATCAAGGACCCTTCTTTGATAACGGGTTTGAGCCTCTGCCTGAACCGTTCGGCCTATTATAA
AA sequence Show only first row Show all	>Potri.016G139500.1 pacid=42809124 polypeptide=Potri.016G139500.1.p locus=Potri.016G139500 ID=Potri.016G139500.1.v4.1 annot-version=v4.1 MMMSSSNNNNNGNYRSVNGSLRESLVGGRNIPVGSQYHRRGHSLTGGGVFSKDTHNKDENLDLFSKNRRSLSVASSDESSDVSVKLGRLSVGSAKLVRSG IDDLLSSEGGKHDYDWLLTPPGTPLFPSSEGSESQPTLVAPRSSSLARSASTTKAASTLSVSQSESYHSSRPARSSSVTRPSISSSQYSTYSSNRSSSIL NTSSASVSSYTRPSSPVSRTPSIARPSTPSARPTPSRSSTPSRARPAPTSSSIDKTRPSQNSRPSTPSSRGQIPANLSTAPTRSNSRPSTPTRRNPAPSS STASSPSTSAGRVLSNNRIPGPTSRPNSPSPRVRPQQPVVPPDFPLDTPPNLRTTLPDRPLSAGRSRPNVHATMKGNPETVGSVIAPRRHSSPIVSRGRL TEPSGKGRVHSNGHIADAPEPRKVSHVSELGMRKPVKSSSTASESTGFGRTISKKSLDMAIRHMDLRNGTGSTRSLSSTTLFPQSIRSATPKTHPARSRS APESINNGNLQNGDVLENESYFSRATEIRREANDGQRYSAKLSEVVDICESSRYDAILLKEDLKNTDWLHSVDDKSDQGPFFDNGFEPLPEPFGLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08670			unknown protein		Potri.016G139500 [exp]	0	1
AT5G12300			Calcium-dependent lipid-bindin...		Potri.001G275800 [exp]	1.00	0.8400
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Potri.018G107600 [exp]	1.41	0.8305
AT5G56890			Protein kinase superfamily pro...		Potri.018G068100 [exp]	2.00	0.8236
AT1G01490			Heavy metal transport/detoxifi...		Potri.014G089700 [exp]	7.48	0.7959
AT5G43020			Leucine-rich repeat protein ki...		Potri.007G046900 [exp]	8.36	0.8008
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.014G066200 [exp]	10.72	0.8159
AT5G59790			Domain of unknown function (DU...		Potri.009G027500 [exp]	12.00	0.7967
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.005G049800 [exp]	12.40	0.7223
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	12.84	0.7968
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.001G295800 [exp]	13.63	0.8251

Compare expression of checked genes

Potri.016G139500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.