Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38600 347 / 9e-122 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 212 / 2e-68 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 205 / 6e-66 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 202 / 1e-64 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 197 / 1e-62 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 171 / 2e-52 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 169 / 2e-51 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24780 149 / 6e-44 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT5G24770 146 / 8e-43 ATVSP2, VSP2 vegetative storage protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G110900 [exp] 397 / 4e-142 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 214 / 3e-69 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 205 / 7e-66 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G152900 [exp] 194 / 1e-61 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 178 / 3e-55 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 173 / 2e-53 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G193500 [exp] 94 / 1e-22 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017060 [exp] 236 / 3e-79 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 192 / 2e-60 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 189 / 2e-59 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011140 [exp] 177 / 6e-55 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 175 / 5e-54 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 168 / 3e-51 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10023731 [exp] 167 / 4e-51 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 154 / 2e-45 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10006849 [exp] 102 / 5e-27 AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10021379 [exp] 97 / 5e-24 AT3G52820 97 / 2e-24 purple acid phosphatase 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03767 [poplar] [flax] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Potri.016G139700.2 pacid=42809802 polypeptide=Potri.016G139700.2.p locus=Potri.016G139700 ID=Potri.016G139700.2.v4.1 annot-version=v4.1 ATGGTGCACAGATTACGGGAGGTGTTGTTGTTATTTTCGTTCCTAGCGATCTTACCCAAGGCTACTGGGGTTGAGGCTTATTCTCGCGGCGGCGTGATAC AGGAAAGTGCTGCCTATTGCCTGAGCTGGAGGTTGGCTGTGGAGGCTAACAATGTGCGTGCGTGGCGCACGGTCCCTTCTCAATGCTTGCGATACGTTGA AACTTACATGCTTGGAGGACAGTATGACAGGGACCTTGACTTGATTGTGGACCAAATCTTGAGTTATGTGAATGAGATAGTTCCTTCTAGTGATGGCATG GACGCTTGGATCCTAGATGTTGATGACACCTGCATCTCCAATGTCTTCTACTACAGAGGAAAGAGATATGGGTGTGATCCATACGATCCAGCTGGTTTCA GGGCATGGGCATTAAAGGGAGGATGTCCAGCAATTCCTGCTGTTCTTGGATTGTTTGACTACCTAGTTCAAAGTGGTTTTAAAGTATTCCTAGTCACTGG CAGAGACAAAGAAGCTCTTGGCCAAGTCACAATTGATAATCTGCATATTCAGGGTTTCATCGGCTACGAGAGAATAATCTTGAGGACAGCAGAATTCATA GGACAAAGCGCAGTGGCATACAAGTCAGAAATAAGAAGGCAATTAGAAAAGGAAGGGTACAGAATATGGGGGAATGTGGGTGATCAATGGAGTGATCTTC AGGGAGAATGTTTAGGAAACCGGACATTCAAGCTACCAAATCCAATGTATTTTGTTCCCTGA
AA sequence Show only first row Show all	>Potri.016G139700.2 pacid=42809802 polypeptide=Potri.016G139700.2.p locus=Potri.016G139700 ID=Potri.016G139700.2.v4.1 annot-version=v4.1 MVHRLREVLLLFSFLAILPKATGVEAYSRGGVIQESAAYCLSWRLAVEANNVRAWRTVPSQCLRYVETYMLGGQYDRDLDLIVDQILSYVNEIVPSSDGM DAWILDVDDTCISNVFYYRGKRYGCDPYDPAGFRAWALKGGCPAIPAVLGLFDYLVQSGFKVFLVTGRDKEALGQVTIDNLHIQGFIGYERIILRTAEFI GQSAVAYKSEIRRQLEKEGYRIWGNVGDQWSDLQGECLGNRTFKLPNPMYFVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38600			HAD superfamily, subfamily III...		Potri.016G139700 [exp]	0	1
					Potri.016G139750 [exp]	1.00	0.8796
AT5G43680			unknown protein		Potri.002G045500 [exp]	4.00	0.7414
AT5G39130			RmlC-like cupins superfamily p...		Potri.004G180200 [exp]	8.48	0.7855
AT5G39130			RmlC-like cupins superfamily p...		Potri.004G180000 [exp]	10.53	0.7766
AT5G63930			Leucine-rich repeat protein ki...		Potri.013G051300 [exp]	12.48	0.7534
					Potri.009G058050 [exp]	15.81	0.7564
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Potri.003G046800 [exp]	17.94	0.7521
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.017G040600 [exp]	18.54	0.7620
AT1G65690			Late embryogenesis abundant (L...		Potri.019G102500 [exp]	20.14	0.7053
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.003G125700 [exp]	26.70	0.7263	Pt-HMA5.1

Compare expression of checked genes

Potri.016G139700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.