Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08570 724 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G08660 672 / 0 Phototropic-responsive NPH3 family protein (.1) AT5G48800 559 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G03010 507 / 1e-173 Phototropic-responsive NPH3 family protein (.1) AT2G47860 472 / 8e-160 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G67385 431 / 2e-144 Phototropic-responsive NPH3 family protein (.1) AT1G30440 371 / 4e-120 Phototropic-responsive NPH3 family protein (.1) AT2G30520 363 / 3e-118 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT5G03250 351 / 2e-113 Phototropic-responsive NPH3 family protein (.1) AT5G66560 350 / 4e-112 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242300 [exp] 593 / 0 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 520 / 9e-179 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 509 / 2e-174 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 466 / 3e-158 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 402 / 6e-133 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 402 / 5e-132 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 394 / 7e-129 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.011G091100 [exp] 383 / 3e-125 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 364 / 3e-118 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025928 [exp] 569 / 0 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10005943 [exp] 467 / 8e-158 AT1G03010 881 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011082 [exp] 406 / 4e-135 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 379 / 2e-123 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 370 / 5e-120 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 356 / 9e-115 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 353 / 5e-114 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 348 / 5e-112 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 346 / 6e-111 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013057 [exp] 343 / 2e-110 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.016G139900.1 pacid=42810021 polypeptide=Potri.016G139900.1.p locus=Potri.016G139900 ID=Potri.016G139900.1.v4.1 annot-version=v4.1 ATGGTGTCTGAGAACCTTCTTTCTTCTTCTAAGAGATCACCTACTACTCCTAACTTCTGCAACTCCTTCACTACTCGTATCTTTTCAGATGTTGCAGGAG ACATTACAATTGTTGTGGATGGGGAGTCTTTTCTACTGCATAAGTTTCCCCTTGTGTCTCGAAGTGGAAAGATACGGAAAATGGTTGCAGATGCAAAGGA CTCAAATATTTCGAAATTGGAGCTCTGCAACTTACCCGGTGGGCCCCATACATTTGAACTTGCCATGAAATTCTGTTATGGCATGAACTTTGAGATCACA ACTGCAAATGTTGCCCATCTGCGCTGCGCTGCTGAATACCTGGAAATGACTGAAGACTACCGGGAAGAAAACCTCATTGCCCGCACGGAGACTTATCTGA ATGAATTTGTGGTGCACAGTCTTGAAAGGTCTGTCGAAGTCCTTGCTACTTGTGAGCTGCTACCTCCCATAGCAGAGGAAGTGGGAATTCCAAACAGATG TATAGAGGCCATTGCCATCAATGCTTGCAAGGAGCAGTTGGTGTCAGGCCTGTCCCATTTAGATTGCAATAGTGAATCCACAGAACTTAAGAGTAGCTGT CTAGAGTGGTGGGTCGAGGATCTCTCGGTGCTAAGGATTGATTATTACCAAAGAGTTATCTGTGCCATGCGAAGTGTAGGAGTCCGGCTAGATAGCATTG TTGCCTCTTTAATGCATTATGCCCAGATATCATTAAAGGGTATTGGAAAATCTCAGATTTGGAATCCAGCGAGGATGAAATCAAGTCCTAACATGGAGGA AAATGATCAGAGTATAATTGTAGAAACTCTTGTAAGTCTAATGCCAACAGATAAGAGCTCTTCCATTCCATTGAATTTTCTGTTCGGGATGTTAAGGATG GCCATCATGTTGGATGCTGCTATTGCATGTAGGCTTGAGCTTGAAAGACGAATAGCTTTTAGGTTGGAAATGGTTTCACTTGATGATCTTCTTATACCAT CTGTCCGGAGTGGGGATTCATTATTTGATGTCGATACTGTCCATCGGATACTAGTAAATTTTCTGCAGCGTGTTGAAGAAGAAGAAAATGAAGATTGTGG GTATGAATCTGAAGGCATTGGATCTCCTGGCCATGGTTCGTTATTGAAAGTTGGAAGGCTTATCGATTCATATCTCGCAGAAACTGCTCCTGATCCATAT TTGAGTTTGCAGAAATTCACTGCCATGATTGAGATACTCCCTGATTATGCTCGAGTGATTGATGATGGGCTTTATCGAGCAATTGACATATATTTGAAGG CTCATCCATTGCTATCTGAGCATGAATGTAAGAAGCTTTGCAAGTTGATAGACTGCCAAAAGCTATCACAAGAAGCGTGCAATCATGCTGCACAGAATGA TCGTCTTCCAGTGCAGATGACAGTTCAAGTTCTCTACTCTGAGCAGCTACGTTTAAAGAATGCCTTGTCTGGAAGCTCAGGAGACGGGTTCCTATCACAG AGAATCAGCAGTGGCATACCCAGCGCAGCGATGTCGCCTCGAGATAATTATGCTTCTTTGCGGAGGGAAAACCGAGAACTAAAGCTTGAGATATCAAGAA TGCGGGTGAGACTGAGTGAGTTGGAGAAGGAGCAGATGTACATGAAACAAGGGATGATTGACAAGTCAGGAAATGGAAAAACTTTCTTCACCTCACTATC GAAGGGAATCGGAAGGATTGGCATTTTTAGCGGCCCAGGAGGAGGGAGGCACCAAAAATCTGGTAGAAAGCCTCGCGGGCCAGAGGGGAAAACTGGCAGG AGTCGCCGGCATTCCATGTCCTAG
AA sequence Show only first row Show all	>Potri.016G139900.1 pacid=42810021 polypeptide=Potri.016G139900.1.p locus=Potri.016G139900 ID=Potri.016G139900.1.v4.1 annot-version=v4.1 MVSENLLSSSKRSPTTPNFCNSFTTRIFSDVAGDITIVVDGESFLLHKFPLVSRSGKIRKMVADAKDSNISKLELCNLPGGPHTFELAMKFCYGMNFEIT TANVAHLRCAAEYLEMTEDYREENLIARTETYLNEFVVHSLERSVEVLATCELLPPIAEEVGIPNRCIEAIAINACKEQLVSGLSHLDCNSESTELKSSC LEWWVEDLSVLRIDYYQRVICAMRSVGVRLDSIVASLMHYAQISLKGIGKSQIWNPARMKSSPNMEENDQSIIVETLVSLMPTDKSSSIPLNFLFGMLRM AIMLDAAIACRLELERRIAFRLEMVSLDDLLIPSVRSGDSLFDVDTVHRILVNFLQRVEEEENEDCGYESEGIGSPGHGSLLKVGRLIDSYLAETAPDPY LSLQKFTAMIEILPDYARVIDDGLYRAIDIYLKAHPLLSEHECKKLCKLIDCQKLSQEACNHAAQNDRLPVQMTVQVLYSEQLRLKNALSGSSGDGFLSQ RISSGIPSAAMSPRDNYASLRRENRELKLEISRMRVRLSELEKEQMYMKQGMIDKSGNGKTFFTSLSKGIGRIGIFSGPGGGRHQKSGRKPRGPEGKTGR SRRHSMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08570			Phototropic-responsive NPH3 fa...		Potri.016G139900 [exp]	0	1
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052900 [exp]	2.64	0.8667
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.002G137800 [exp]	2.82	0.8563
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	6.24	0.8378	Pt-SPY.1
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Potri.013G000300 [exp]	6.63	0.8344	PHYC.1,phya
AT5G13760			Plasma-membrane choline transp...		Potri.009G056700 [exp]	9.53	0.8145
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.001G395100 [exp]	10.09	0.8074
AT1G64700			unknown protein		Potri.001G448500 [exp]	13.03	0.7931
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	19.62	0.8159
AT3G14460			LRR and NB-ARC domains-contain...		Potri.014G005400 [exp]	20.00	0.8089
AT2G02240		MEE66	maternal effect embryo arrest ...		Potri.018G015800 [exp]	21.33	0.8330

Compare expression of checked genes

Potri.016G139900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.