Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06840 1001 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 930 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 921 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 666 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 460 / 1e-146 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 419 / 3e-131 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 418 / 5e-131 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 391 / 9e-122 Leucine-rich repeat protein kinase family protein (.1) AT1G53420 313 / 7e-92 Leucine-rich repeat transmembrane protein kinase (.1) AT5G65710 251 / 1e-69 HSL2 HAESA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G159200 [exp] 1050 / 0 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G111100 [exp] 1043 / 0 AT5G01950 1052 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131800 [exp] 1042 / 0 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140300 [exp] 1032 / 0 AT5G01950 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159500 [exp] 1026 / 0 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140200 [exp] 1019 / 0 AT5G01950 1018 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 460 / 2e-146 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 455 / 9e-145 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 452 / 1e-143 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019114 [exp] 1038 / 0 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 1027 / 0 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 956 / 0 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 816 / 0 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 759 / 0 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 756 / 0 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 446 / 1e-140 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 367 / 6e-112 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 277 / 2e-83 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011576 [exp] 281 / 5e-81 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.016G140101.1 pacid=42810653 polypeptide=Potri.016G140101.1.p locus=Potri.016G140101 ID=Potri.016G140101.1.v4.1 annot-version=v4.1 ATGAAGATGTTGAGGCTGAGGTTCTGTCTCTTTGGAGTCATTATTGCTTTGTTGCAATGTTACTTTGTTGTGCTTTCTTCAGCGCAGAAAACTCATCCAT TGGAAGTCAGTGCTTTGCAAGCAGTCCGTCGGAAGCTCATAGATACACAGGGCAATCTTAATGACTGGAAAAAGAGTGATCCTTGTACATCGAACTGGAC AGGAGTAATCTGCGTCGAGAAAAATGATGGTTATCGTCACGTCGAAGAATTGCGTATGCTACGTCTGAATCTCTCTGGAAATTTAGCTCCTGAACTAGGT CTCCTATCATATGCAAAAAGATTGAATTTTATGTGGAACAATATAAGTGGTGGCATACCAAAAGAGATAGGGAAAATGACTTCCTTGCAGCTTTTGCTTT TGAGCGGAAACCAAATATCGGGTCCTTTGCCAGATGAGCTTGGTAATCTCCCCAACATAACCAAGTTTCAGCTGGACATAAATCAAATATCAGGACCACT TCCCAGATCGTTTGCAAACTTGGCCACTGTCAAGCACTTTCATATGAACAACAACTCAATCAGTGGTCAGATTCCGCCAGAACTTGGGGCATTACCTAAA CTCATACACTTCCTGTTGGATAACAACAACTTGTCAGGCTATCTTCCACCAGAGCTTTCAAAGATGCCAAAGTTGTTGGTTTTCCAACTTGATAACAACA ACTTTAATGGAACGGAGATCCCAGAGTCTTATGGAAACATGTCCACACTGTTGAAATTGAGTCTTAGGAACTGCAACTTGCAAGGATCTGTTCCCGATCT GAGTGGCTCACCACACCTTCTCTACTTGGATCTAAGCTCAAATAAGCTAGTCGGAAGCATACCGACAAATAAGCTTTCTGTTAATATCACAACTATCAAG TTATCCAACAATATGCTCACTGGACCAATCCCTTCAAATTTCTCAGGCTTTCCTCATCTCCAAAAACTGTTGCTTGCGAACAACAATTTAAGTGGTGATG CTCCCACTAACATTTGGCAGAGTTTGACTCTTGGTTCATTTGCAAAACTTACCTTGGATTTCCGGAACAATTCACTTACGAATATTTCAGGCATTATAAA TCCTCCTGCAAACGTTAGCATCAAGCTTCAAGGCAATCCTGTTTGTCAAAGAGCAAATGAGCTAAACATACTCCCGTTTTGTGGAGTCCCAACTGGAGAT ACTGAGGCTCCTGGAAGCTCAAATGACTTCCCTGAAGGCTGCAAAACTCAATCTTGTCCCTTCAGTGATAATTTTGAATACGTTCCAGAATCTCCTTCTC CCTGCTTCTGTGCTGCACCTCTTGGCATTGGATTACGCTTGAGAAGTCCCAGCATATCAGATTTTCAACCATATAAATTCCCATTTGAGCTTTGGATAAC CGACTATCTTGGCATGAACCCTTACCAACTAGTGGTTGACTCATTCATGTGGGAAGAAGGTCCCCGGCTGAGGATGTATTTGAAAATCTTTCCTTCATTT AGTAATGATACTCATAAATTCAACACAAGCGAGATTCTACAGCTCATGGACGAGTTTGCTACATTTTCCTTTCCCAGCGATGATACCTTTGGCCCATATG ATCTACTTAATTTCACGCTCCTTGGACCTTACAAAAATGTGATATTTTTCAAGCTTCCGAAATCAGGAATGAGCAGAGGTGCCCTTCTTGGAATTGTGTT AGGATCCATGTCCCTCATAGTTGCTATATCTTTGGTGATTGCATTCATTTTCTATAAAAAGCACAAGAGATTCTATCGTCAAGTTTTCAAGAAAAAGTCA ACTCAAAAACTTCCATTTAAAACTGAAAGTGTGAAAGAGTTCAGTTTTCTAGTACTTGAAATGGCAACAAATGGTTTTGATAGCTCTATGCAAGTTGGGC AAGGAGGTTACGGAAAGGTGTATAAAGGAGTTTTAGCTGATGGTACAATAGTGGCCATCAAGCGTGCACATGAAGGATCTTTGCAGGGTCAGAAAGAGTT CTTCACTGAAATTGAACTCTTGTCACGCTTGCATCATCGCAACTTGGTGCCATTGGTTGGGTATTGTGTTGAACAAGGCGAGCAGATGCTAGTGTATGAA TTCATGCCTAATGGATCTGTTGGATACCTCCTCTCTGGTAAATTCAAAAGACCTGCAAGTTTTTCTATGAGGATGAATATTGCATTGGGTTCAGCCAAGG GTATACTCTACCTTCACACTGAAGCTGAGCCACCAATCATCCATCGAGATATCAAAGCAAACAACATATTACTGGACTTCAAGTTTACTGCAAAAGTTTC AGATTTCGGAATTTCGAAGCTTGCACCAGTACAAGATTGCGAAGGCGGTGCGTCTCATATATCCACAATTGTGAAAGGCACGCCGGGATACCTCGATCCA GAATATTTTCTGACCAACAAGTTGACAGATAAGAGTGATGTTTATAGCCTTGGAGTTGTATTTCTTGAACTCTTGACAGGGATGGAGCCTATATCTCATG GAAAATATATCGTTCGAGAGGTTAACGCAGCATGTCAATCTGGAATAATGTTCTCCATCGTAGACCAAAAAATGGGTCCTTATCCCTCCGATTGTGTCAA GAAATTCATGGCATTGGCCCTAAAGTGCTGTCATGATGAGCCTGCTGAACGACCATCAATGTTGGAAGTGGTTCGCGAGTTGGAGAATATATCCTATATG CTCCAAGAATCTGGCCCCATTTCATCAGAGCTTGAGACATCTGGAATGTCAGGGGTGGATTCGCCAGCTCTCTTTACTACAGGCAAACCTTCTGCCTCCT CCGGTTTCCTTGGAAGTGATCTAGTCAGTGGTGTATTTCCCGTTATCAGGCCTCGCTGA
AA sequence Show only first row Show all	>Potri.016G140101.1 pacid=42810653 polypeptide=Potri.016G140101.1.p locus=Potri.016G140101 ID=Potri.016G140101.1.v4.1 annot-version=v4.1 MKMLRLRFCLFGVIIALLQCYFVVLSSAQKTHPLEVSALQAVRRKLIDTQGNLNDWKKSDPCTSNWTGVICVEKNDGYRHVEELRMLRLNLSGNLAPELG LLSYAKRLNFMWNNISGGIPKEIGKMTSLQLLLLSGNQISGPLPDELGNLPNITKFQLDINQISGPLPRSFANLATVKHFHMNNNSISGQIPPELGALPK LIHFLLDNNNLSGYLPPELSKMPKLLVFQLDNNNFNGTEIPESYGNMSTLLKLSLRNCNLQGSVPDLSGSPHLLYLDLSSNKLVGSIPTNKLSVNITTIK LSNNMLTGPIPSNFSGFPHLQKLLLANNNLSGDAPTNIWQSLTLGSFAKLTLDFRNNSLTNISGIINPPANVSIKLQGNPVCQRANELNILPFCGVPTGD TEAPGSSNDFPEGCKTQSCPFSDNFEYVPESPSPCFCAAPLGIGLRLRSPSISDFQPYKFPFELWITDYLGMNPYQLVVDSFMWEEGPRLRMYLKIFPSF SNDTHKFNTSEILQLMDEFATFSFPSDDTFGPYDLLNFTLLGPYKNVIFFKLPKSGMSRGALLGIVLGSMSLIVAISLVIAFIFYKKHKRFYRQVFKKKS TQKLPFKTESVKEFSFLVLEMATNGFDSSMQVGQGGYGKVYKGVLADGTIVAIKRAHEGSLQGQKEFFTEIELLSRLHHRNLVPLVGYCVEQGEQMLVYE FMPNGSVGYLLSGKFKRPASFSMRMNIALGSAKGILYLHTEAEPPIIHRDIKANNILLDFKFTAKVSDFGISKLAPVQDCEGGASHISTIVKGTPGYLDP EYFLTNKLTDKSDVYSLGVVFLELLTGMEPISHGKYIVREVNAACQSGIMFSIVDQKMGPYPSDCVKKFMALALKCCHDEPAERPSMLEVVRELENISYM LQESGPISSELETSGMSGVDSPALFTTGKPSASSGFLGSDLVSGVFPVIRPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06840			Leucine-rich repeat protein ki...		Potri.016G140101 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.001G305400 [exp]	7.07	0.9598	1
AT1G74110		CYP78A10	"cytochrome P450, family 78, s...		Potri.003G173500 [exp]	7.21	0.9415
AT5G20050			Protein kinase superfamily pro...		Potri.018G070800 [exp]	7.34	0.9453
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.012G048900 [exp]	7.34	0.9545
AT1G52540			Protein kinase superfamily pro...		Potri.015G134500 [exp]	11.31	0.9520
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.002G188900 [exp]	12.96	0.9466
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191400 [exp]	14.31	0.9513
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.001G280000 [exp]	14.69	0.9498
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.002G080500 [exp]	16.73	0.9428
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Potri.018G075000 [exp]	19.18	0.9351

Compare expression of checked genes

Potri.016G140101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.