Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01950 1018 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 998 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G37450 779 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 689 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 464 / 3e-148 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 408 / 5e-127 Leucine-rich repeat protein kinase family protein (.1) AT5G49760 392 / 4e-121 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 275 / 9e-79 Leucine-rich repeat protein kinase family protein (.1) AT3G24790 249 / 2e-74 Protein kinase superfamily protein (.1) AT1G61860 245 / 1e-72 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G111100 [exp] 1288 / 0 AT5G01950 1052 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140300 [exp] 1237 / 0 AT5G01950 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131800 [exp] 991 / 0 AT1G06840 1092 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G140101 [exp] 986 / 0 AT1G06840 1001 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159500 [exp] 983 / 0 AT1G06840 1102 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G159200 [exp] 982 / 0 AT1G06840 1040 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 471 / 2e-150 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231700 [exp] 465 / 2e-148 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 451 / 6e-143 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035605 [exp] 1116 / 0 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 1011 / 0 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 1004 / 0 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 962 / 0 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 717 / 0 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 615 / 0 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012159 [exp] 455 / 4e-144 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 378 / 6e-116 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 295 / 6e-90 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 269 / 4e-81 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G140200.4 pacid=42809350 polypeptide=Potri.016G140200.4.p locus=Potri.016G140200 ID=Potri.016G140200.4.v4.1 annot-version=v4.1 ATGGAAATCAAGATGTCGTGGATGAGAAGTCTTGGCTGTGTTTTTGTGCTGTCCTATTGTTACTTGGTGCTCCAAACAGATGCACAAATTACAGATCCCT CAGAAGTTGCTGCATTGAAATCAGTCAAGAAAAGTTTGGTTGATCCTATGAAGCATCTCAGTAGTTGGAAAAGGGGAGATCCTTGCGCATCCAACTGGAC TGGCATTTTTTGTTTGGACACATATGCGACTGATGGATATTTGCACGTCCGAGAACTGCAACTGCTGAATATGAATCTTTCTGGACATTTAACACCTGAG CTTGGCCAACTTTCTCGACTTAAAATATTGGATTTCATGTGGAACGAATTGGGTGGCAGCATACCGAAGGAGATAGGAAACATTTCATCTTTACAACTCC TGCTCTTGAATGGAAACAAATTATCAGGTTTTTTACCTGATGAGCTTGGCTATTTATCGAAATTAGATCGACTACAAGTGGACATGAACTATATTTCGGG TCCAATACCAACATCATTTGCCAACTTGAGCACAGTGAAACATCTCCACATGAACAACAACTCGATTAGGGGTCAAATCCCACCCGAGCTTTCCAAATTA TCCACTCTTCGTCACTTGCTTTTGGATAATAATAATTTATCTGGGTATCTTCCACAAGAATTCTCAGACTTGCCGGAGTTGCGCATACTTCAGCTTGACA ACAACAAATTTATTGGCTCTGGGATTCCAGATACCTATGGCAACCTTTCCAAATTAGCAAAATTAAGTCTCAGAAATTGCAGCTTACAAGGAAGCATACC GGGCCTTAGCAGCATACAAAACCTTTTATATCTGGATCTAAGCAAGAATGAGCTCAATGGACCCTTGCCACCAACACTCTCTGATAACATAACCACTATT GATCTGTCAGATAACCATCTTAATGGATCTATACCAAGAAGTTTCTCAAATCTTCCTTCTCTGCAGAGACTGTCTCTCGAAAATAATCTGTTGATCGGTT ATGTATCAGCTAACATGTGGCAGAACATGTCGTCCGCTAAAAGTGCCGGCCTTACACTTGATCTCAGGAACAATTCGCTTTCAAGCATTTTAGGAGAAGT GAATCTGCCAGAAAATGTCACCCTGAGGCTTGGAGGCAATCCTATCTGCCATGAAGCTAACACACCAAACATTATCCAGTTCTGTGAACCTGAAGCTGGA GGAGATAAGACTCCTGAAAGGCTAACAAATTCAAAAGTTTCATGTTATGTTCAATCATGTCCAACAGATGACTTCTTTGAATATGTTGCATCATCTCCTG TGCCATGCTTTTGTGCAGCCCCTCTCAGAATTGGATACCGTCTTAAGAGCCCTAGCTTCTCTTATTTCACACCACATGTTAATCAATTCGAGAAGTACGT AACGCGTTCTCTTAACATGAGCTCGTATCAGTTGTCCATTGATTCCTTTTTCTGGGAAGAAGGACCTCGTCTAAGGATGTATTTGAAGCTCTTTCCTCCA GTTAATAATGTTAATTCAACAATGTACAATGCGACAGAGGTTCAACGAATAAGAGATATATTTGCATCATGGCAATTTCCTCCAAATGACTTCTTTGGAC CATATGAGCTTCTCAACTTCACCCTACTGGGACCTTATGCACAGATGAATGATGAGTCCCATAAAGAAGGTATCAGTAAGGGTGTTTGGGTAGCCATAAT ACTAGCTGCTATTGCCTGTGCTGTTGTAATAATTTCAGCAATCACAGTTTTGATTATTGTAAGAAATACCAGATACAGTCAGAGGCTTCCAAGAAAAGAT TTATCCTTAACAGTACAGATGAAAATTGATGGAGTGGAGAGCTTCACTTTCAAAGAAATAGTCTTGGCTACCGATAACTTCAACAGCTCGACACAAATTG GTCAAGGAGGTTATGGAAAGGTTTATAGAGGTGTTTTACCAGACAAAACAGTAGTAGCTATAAAGCGAGCCGAAGAAGGATCCTTACAAGGCGAAAAGGA ATTTTTGACGGAGATCAAGTTGTTGTCAAGGTTACATCACCGAAATCTAGTTTCGTTGACTGGATATTGTGTTGAAAGAGGGGAGCAGATGCTAGTATAC GAGTTCATGCCCAATGGTACATTGAGGGACTGGCTGTCTGACAAGGAGAAGTTCAGCTTTGGAACAAGGTTAAGCATTGCTTTGGGTTCAGCAAAGGGAA TCCTTTACCTACATACCGAAGCAGACCCTCCAGTATTCCACCGAGATATTAAGGCTAGCAACATACTTTTGGACTCTAAGCTTACTGCTAAGGTTGCCGA CTTTGGACTCTCACTTCTGGCTCCTGTCATGGATGATGATGGATATCAGCCTAATCATGTATCTACAGTGGTGAAGGGAACTCCAGGATACCTTGATCCA GAATATTTTTTGACCCGCAAGTTGACAGACAAGAGTGATGTCTACAGCCTTGGAGTTGTATTTCTGGAGCTCTTGACAGGAATGCAGCCAATATATCGTG GAAAAAACATAGTCCGTGAGGTAAATATTGCTTGTGAGTCAGATAAGATGTTCTCGATCATAGACAGAAGAATGGGTTCCTATCCATCTAAATGCATCGA GAGATTTGTAGCTTTGGCACTCAGGTGTTGCCATGATAAGCAAGACAAGCGGCCATCAATGCTGGAAGTGGTCAGGGAACTTGAAATCATTCTCAGAATC TTGCCAGAAACAGAAACTACTGAAATAGATTCTGCTTCTGCTTATTCCAGGAAGACCACACCCACATTTTCTGGCACGTCAGCATCTTCATCTTCATTCT GCACAAACAGGGATATATCCAACTCGTCCAGTCACTTGGGAAGTGATCTTAGCAGTGGTGTCATTCCATTCATACCGCCTCGTTGA
AA sequence Show only first row Show all	>Potri.016G140200.4 pacid=42809350 polypeptide=Potri.016G140200.4.p locus=Potri.016G140200 ID=Potri.016G140200.4.v4.1 annot-version=v4.1 MEIKMSWMRSLGCVFVLSYCYLVLQTDAQITDPSEVAALKSVKKSLVDPMKHLSSWKRGDPCASNWTGIFCLDTYATDGYLHVRELQLLNMNLSGHLTPE LGQLSRLKILDFMWNELGGSIPKEIGNISSLQLLLLNGNKLSGFLPDELGYLSKLDRLQVDMNYISGPIPTSFANLSTVKHLHMNNNSIRGQIPPELSKL STLRHLLLDNNNLSGYLPQEFSDLPELRILQLDNNKFIGSGIPDTYGNLSKLAKLSLRNCSLQGSIPGLSSIQNLLYLDLSKNELNGPLPPTLSDNITTI DLSDNHLNGSIPRSFSNLPSLQRLSLENNLLIGYVSANMWQNMSSAKSAGLTLDLRNNSLSSILGEVNLPENVTLRLGGNPICHEANTPNIIQFCEPEAG GDKTPERLTNSKVSCYVQSCPTDDFFEYVASSPVPCFCAAPLRIGYRLKSPSFSYFTPHVNQFEKYVTRSLNMSSYQLSIDSFFWEEGPRLRMYLKLFPP VNNVNSTMYNATEVQRIRDIFASWQFPPNDFFGPYELLNFTLLGPYAQMNDESHKEGISKGVWVAIILAAIACAVVIISAITVLIIVRNTRYSQRLPRKD LSLTVQMKIDGVESFTFKEIVLATDNFNSSTQIGQGGYGKVYRGVLPDKTVVAIKRAEEGSLQGEKEFLTEIKLLSRLHHRNLVSLTGYCVERGEQMLVY EFMPNGTLRDWLSDKEKFSFGTRLSIALGSAKGILYLHTEADPPVFHRDIKASNILLDSKLTAKVADFGLSLLAPVMDDDGYQPNHVSTVVKGTPGYLDP EYFLTRKLTDKSDVYSLGVVFLELLTGMQPIYRGKNIVREVNIACESDKMFSIIDRRMGSYPSKCIERFVALALRCCHDKQDKRPSMLEVVRELEIILRI LPETETTEIDSASAYSRKTTPTFSGTSASSSSFCTNRDISNSSSHLGSDLSSGVIPFIPPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01950			Leucine-rich repeat protein ki...		Potri.016G140200 [exp]	0	1
AT3G49160			pyruvate kinase family protein...		Potri.012G002500 [exp]	2.44	0.9111
AT5G48370			Thioesterase/thiol ester dehyd...		Potri.014G174800 [exp]	3.31	0.9196
AT1G06540			unknown protein		Potri.005G201300 [exp]	6.16	0.9152
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	8.36	0.9058
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G198401 [exp]	8.77	0.8966
AT3G46540			ENTH/VHS family protein (.1)		Potri.001G239200 [exp]	14.96	0.9040
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096000 [exp]	19.44	0.9002
AT3G45310			Cysteine proteinases superfami...		Potri.006G141700 [exp]	20.39	0.9035	Pt-ELSA.1
AT1G06760			winged-helix DNA-binding trans...		Potri.005G219800 [exp]	24.24	0.8936	HON904
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Potri.001G278200 [exp]	24.37	0.8909

Compare expression of checked genes

Potri.016G140200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.